Archoplites interruptus

Sacramento perch

Maximum lifespan

6 yr

AnAge record

mtDNA size

16,599 bp

RefSeq NC_066917.1

GC content

47.27%

Whole genome

Non-coding

1,038 bp

D-loop 640 bp

Where Sacramento perch sits among 2,335 species

Whole-genome GC content against maximum lifespan. Sacramento perch has the 1,929th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,599 bp

GC skew (G − C) / (G + C): −0.262
AT skew (A − T) / (A + T): +0.012

Life history

Maximum lifespan: 6 years
Adult weight: 792 g

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 04118)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,599 bp

Protein-coding11,408 bp

12S rRNA947 bp

16S rRNA1,655 bp

All tRNA1,551 bp

D-loop640 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Archoplites interruptus genes

ND1NADH dehydrogenase subunit 1	975 bp	23.4%	27.8%	15.8%	33.0%	48.82%	−0.353	−0.086
ND2NADH dehydrogenase subunit 2	1,046 bp	25.6%	25.2%	13.5%	35.7%	49.14%	−0.451	+0.008
COX1Cytochrome c oxidase subunit I	1,551 bp	23.5%	29.5%	18.6%	28.4%	47.00%	−0.207	−0.114
COX2Cytochrome c oxidase subunit II	691 bp	28.1%	26.9%	16.9%	28.1%	45.01%	−0.248	+0.021
ATP8ATP synthase F0 subunit 8	168 bp	28.6%	23.2%	11.3%	36.9%	48.21%	−0.531	+0.103
ATP6ATP synthase F0 subunit 6	684 bp	24.3%	27.8%	13.9%	34.1%	47.95%	−0.421	−0.067
COX3Cytochrome c oxidase subunit III	785 bp	23.1%	27.4%	18.5%	31.1%	49.55%	−0.255	−0.086
ND3NADH dehydrogenase subunit 3	350 bp	20.6%	28.9%	16.9%	33.7%	50.57%	−0.333	−0.168
ND4LNADH dehydrogenase subunit 4L	297 bp	22.9%	29.0%	16.2%	32.0%	48.15%	−0.329	−0.117
ND4NADH dehydrogenase subunit 4	1,381 bp	22.4%	27.7%	16.8%	33.2%	49.96%	−0.328	−0.106
ND5NADH dehydrogenase subunit 5	1,839 bp	27.0%	27.7%	14.7%	30.6%	45.30%	−0.352	−0.014
ND6NADH dehydrogenase subunit 6	522 bp	35.8%	15.3%	15.1%	33.7%	48.85%	−0.380	+0.401
CYTBCytochrome b	1,141 bp	22.3%	27.5%	16.5%	33.7%	50.22%	−0.344	−0.106
12S rRNA12S ribosomal RNA	947 bp	30.5%	21.1%	22.1%	26.3%	48.36%	−0.087	+0.182
16S rRNA16S ribosomal RNA	1,655 bp	32.3%	22.4%	20.9%	24.4%	45.32%	−0.077	+0.182
D-loopControl region (D-loop)	640 bp	29.1%	30.0%	18.1%	22.8%	40.94%	−0.115	−0.016

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU122

UUC115

Leu L17.3%

UUA82

UUG20

CUU154

CUC169

CUA157

CUG78

Ile I7.0%

AUU159

AUC106

Met M4.0%

AUA91

AUG62

Val V5.7%

GUU68

GUC58

GUA61

GUG30

Ser S6.3%

UCU44

UCC71

UCA53

UCG14

AGU11

AGC47

Pro P6.0%

CCU38

CCC141

CCA40

CCG10

Thr T7.8%

ACU55

ACC130

ACA94

ACG19

Ala A9.4%

GCU56

GCC176

GCA113

GCG13

Tyr Y2.8%

UAU40

UAC68

His H2.8%

CAU22

CAC85

Gln Q2.5%

CAA71

CAG25

Asn N3.1%

AAU49

AAC68

Lys K1.9%

AAA56

AAG17

Asp D1.9%

GAU18

GAC55

Glu E2.7%

GAA72

GAG31

Cys C0.7%

UGU6

UGC19

Trp W3.2%

UGA89

UGG31

Arg R2.0%

CGU11

CGC16

CGA40

CGG10

Gly G6.4%

GGU31

GGC108

GGA52

GGG53

Stop 0.2%

UAA6

UAG1

AGA0

AGG0

Genome map

39 annotated features in NC_066917.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop2

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 39 features as a table

Annotated features of Archoplites interruptus (NC_066917.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,015	947 bp	+	48.4%
tRNA-Val	Transfer RNA	1,016	1,087	72 bp	+	–
16S rRNA	Ribosomal RNA	1,125	2,779	1,655 bp	+	45.3%
tRNA-Leu (UUR)	Transfer RNA	2,780	2,853	74 bp	+	–
ND1	Protein-coding gene	2,854	3,828	975 bp	+	48.8%
tRNA-Ile	Transfer RNA	3,833	3,902	70 bp	+	–
tRNA-Gln	Transfer RNA	3,902	3,972	71 bp	−	–
tRNA-Met	Transfer RNA	3,972	4,040	69 bp	+	–
ND2	Protein-coding gene	4,041	5,086	1,046 bp	+	49.1%
tRNA-Trp	Transfer RNA	5,087	5,158	72 bp	+	–
tRNA-Ala	Transfer RNA	5,161	5,229	69 bp	−	–
tRNA-Asn	Transfer RNA	5,231	5,303	73 bp	−	–
tRNA-Cys	Transfer RNA	5,340	5,405	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,406	5,475	70 bp	−	–
COX1	Protein-coding gene	5,477	7,027	1,551 bp	+	47.0%
tRNA-Ser (UCN)	Transfer RNA	7,028	7,098	71 bp	−	–
tRNA-Asp	Transfer RNA	7,102	7,174	73 bp	+	–
COX2	Protein-coding gene	7,183	7,873	691 bp	+	45.0%
tRNA-Lys	Transfer RNA	7,874	7,947	74 bp	+	–
ATP8	Protein-coding gene	7,949	8,116	168 bp	+	48.2%
ATP6	Protein-coding gene	8,107	8,790	684 bp	+	48.0%
COX3	Protein-coding gene	8,790	9,574	785 bp	+	49.6%
tRNA-Gly	Transfer RNA	9,575	9,646	72 bp	+	–
ND3	Protein-coding gene	9,647	9,996	350 bp	+	50.6%
tRNA-Arg	Transfer RNA	9,997	10,065	69 bp	+	–
ND4L	Protein-coding gene	10,066	10,362	297 bp	+	48.2%
ND4	Protein-coding gene	10,356	11,736	1,381 bp	+	50.0%
tRNA-His	Transfer RNA	11,737	11,805	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,806	11,873	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,878	11,950	73 bp	+	–
ND5	Protein-coding gene	11,951	13,789	1,839 bp	+	45.3%
ND6	Protein-coding gene	13,786	14,307	522 bp	−	48.9%
tRNA-Glu	Transfer RNA	14,308	14,376	69 bp	−	–
CYTB	Protein-coding gene	14,381	15,521	1,141 bp	+	50.2%
tRNA-Thr	Transfer RNA	15,522	15,593	72 bp	+	–
tRNA-Pro	Transfer RNA	15,593	15,662	70 bp	−	–
D-loop	Control region	15,879	16,476	598 bp	–	40.9%
D-loop	Control region	16,554	16,595	42 bp	–	40.9%