MitoAge

Arctocephalus pusillus

South African fur seal

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Maximum lifespan
32.1 yr
AnAge record
mtDNA size
16,652 bp
RefSeq NC_008417.1
GC content
40.81%
Whole genome
Non-coding
1,251 bp
D-loop 1,193 bp

Where South African fur seal sits among 2,335 species

Whole-genome GC content against maximum lifespan. South African fur seal has the 385th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %South African fur seal
  • This species
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,652 bp
GC skew (G − C) / (G + C)
−0.318
AT skew (A − T) / (A + T)
+0.129

Life history

Maximum lifespan
32.1 years
Adult weight
127.6 kg
Birth weight
6.2 kg
Female sexual maturity
3.5 years
Male sexual maturity
4.5 years
Gestation or incubation
368 days
Litter or clutch size
1
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02212)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,652 bp
Protein-coding11,350 bp
12S rRNA961 bp
16S rRNA1,577 bp
All tRNA1,520 bp
D-loop1,193 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp30.5%25.7%13.3%30.5%43.78%−0.394+0.086
ND2NADH dehydrogenase subunit 21,044 bp37.4%26.0%9.5%27.2%36.69%−0.483+0.180
COX1Cytochrome c oxidase subunit I1,545 bp27.6%29.2%17.6%25.6%43.24%−0.186−0.029
COX2Cytochrome c oxidase subunit II685 bp34.2%27.4%13.4%25.0%38.39%−0.300+0.109
ATP8ATP synthase F0 subunit 8204 bp39.7%25.5%7.8%27.0%34.80%−0.549+0.218
ATP6ATP synthase F0 subunit 6681 bp30.7%27.8%11.5%30.1%41.56%−0.449+0.050
COX3Cytochrome c oxidase subunit III784 bp27.3%27.7%15.6%29.5%45.03%−0.309−0.007
ND3NADH dehydrogenase subunit 3348 bp32.5%27.3%11.5%28.7%40.23%−0.429+0.087
ND4LNADH dehydrogenase subunit 4L297 bp27.6%31.3%14.8%26.3%41.08%−0.279−0.063
ND4NADH dehydrogenase subunit 41,378 bp32.5%26.8%11.8%29.0%40.71%−0.422+0.097
ND5NADH dehydrogenase subunit 51,827 bp33.5%25.7%11.4%29.4%40.83%−0.440+0.132
ND6NADH dehydrogenase subunit 6528 bp43.2%17.8%9.7%29.4%39.02%−0.505+0.416
CYTBCytochrome b1,140 bp31.0%25.9%13.4%29.7%43.16%−0.378+0.090
12S rRNA12S ribosomal RNA961 bp36.8%22.0%17.2%24.0%41.21%−0.167+0.253
16S rRNA16S ribosomal RNA1,577 bp38.3%22.7%17.4%21.6%39.00%−0.106+0.256
D-loopControl region (D-loop)1,193 bp33.7%25.7%13.5%27.1%40.57%−0.335+0.134

Codon usage

Counts per codon, darker is more frequent

3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU91
UUC137
Leu L15.8%
UUA84
UUG24
CUU63
CUC86
CUA297
CUG48
Ile I8.4%
AUU141
AUC180
Met M6.9%
AUA216
AUG46
Val V4.7%
GUU30
GUC30
GUA95
GUG25
Ser S7.5%
UCU45
UCC65
UCA101
UCG20
AGU15
AGC40
Pro P5.2%
CCU42
CCC76
CCA69
CCG9
Thr T8.5%
ACU57
ACC102
ACA143
ACG22
Ala A6.8%
GCU44
GCC110
GCA84
GCG19
Tyr Y3.4%
UAU52
UAC77
His H2.6%
CAU29
CAC71
Gln Q2.3%
CAA74
CAG12
Asn N4.0%
AAU53
AAC98
Lys K2.6%
AAA92
AAG7
Asp D1.8%
GAU29
GAC40
Glu E2.5%
GAA79
GAG18
Cys C0.6%
UGU6
UGC18
Trp W2.7%
UGA93
UGG9
Arg R1.7%
CGU6
CGC11
CGA45
CGG4
Gly G5.7%
GGU34
GGC47
GGA117
GGG19
Stop 0.2%
UAA6
UAG2
AGA1
AGG0

Genome map

38 annotated features in NC_008417.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17272 bp+–
12S rRNARibosomal RNA731,033961 bp+41.2%
tRNA-ValTransfer RNA1,0341,10067 bp+–
16S rRNARibosomal RNA1,1012,6771,577 bp+39.0%
tRNA-Leu (UUR)Transfer RNA2,6782,75376 bp+–
ND1Protein-coding gene2,7563,712957 bp+43.8%
tRNA-IleTransfer RNA3,7123,78170 bp+–
tRNA-GlnTransfer RNA3,7793,85274 bp−–
tRNA-MetTransfer RNA3,8543,92269 bp+–
ND2Protein-coding gene3,9234,9661,044 bp+36.7%
tRNA-TrpTransfer RNA4,9655,03268 bp+–
tRNA-AlaTransfer RNA5,0435,11169 bp−–
tRNA-AsnTransfer RNA5,1135,18573 bp−–
tRNA-CysTransfer RNA5,2185,28568 bp−–
tRNA-TyrTransfer RNA5,2865,35368 bp−–
COX1Protein-coding gene5,3556,8991,545 bp+43.2%
tRNA-Ser (UCN)Transfer RNA6,8976,96569 bp−–
tRNA-AspTransfer RNA6,9727,03867 bp+–
COX2Protein-coding gene7,0397,723685 bp+38.4%
tRNA-LysTransfer RNA7,7247,79370 bp+–
ATP8Protein-coding gene7,7957,998204 bp+34.8%
ATP6Protein-coding gene7,9568,636681 bp+41.6%
COX3Protein-coding gene8,6369,419784 bp+45.0%
tRNA-GlyTransfer RNA9,4209,48970 bp+–
ND3Protein-coding gene9,4909,837348 bp+40.2%
tRNA-ArgTransfer RNA9,8379,90569 bp+–
ND4LProtein-coding gene9,90610,202297 bp+41.1%
ND4Protein-coding gene10,19611,5731,378 bp+40.7%
tRNA-HisTransfer RNA11,57411,64269 bp+–
tRNA-Ser (AGY)Transfer RNA11,64311,70159 bp+–
tRNA-Leu (CUN)Transfer RNA11,70211,77170 bp+–
ND5Protein-coding gene11,77213,5981,827 bp+40.8%
ND6Protein-coding gene13,58214,109528 bp−39.0%
tRNA-GluTransfer RNA14,11014,17869 bp−–
CYTBProtein-coding gene14,18315,3221,140 bp+43.2%
tRNA-ThrTransfer RNA15,32315,39472 bp+–
tRNA-ProTransfer RNA15,39415,45966 bp−–
D-loopControl region15,46016,6521,193 bp–40.6%

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