MitoAge

Arctonyx collaris

Hog badger

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Maximum lifespan
15.8 yr
AnAge record
mtDNA size
16,481 bp
RefSeq NC_020645.1
GC content
38.40%
Whole genome
Non-coding
1,093 bp
D-loop 1,034 bp

Where Hog badger sits among 2,335 species

Whole-genome GC content against maximum lifespan. Hog badger has the 1,183rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Hog badger
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,481 bp
GC skew (G − C) / (G + C)
−0.317
AT skew (A − T) / (A + T)
+0.091

Life history

Maximum lifespan
15.8 years
Adult weight
10.5 kg
Birth weight
58 g
Gestation or incubation
42 days
Litter or clutch size
3

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02169)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,481 bp
Protein-coding11,354 bp
12S rRNA960 bp
16S rRNA1,577 bp
All tRNA1,507 bp
D-loop1,034 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp31.7%29.2%11.4%27.6%39.06%−0.416+0.041
ND2NADH dehydrogenase subunit 21,042 bp37.0%27.9%9.2%25.8%35.03%−0.474+0.140
COX1Cytochrome c oxidase subunit I1,545 bp29.0%31.3%16.6%23.1%39.68%−0.165−0.039
COX2Cytochrome c oxidase subunit II684 bp33.8%28.7%13.5%24.1%37.57%−0.284+0.082
ATP8ATP synthase F0 subunit 8207 bp41.1%29.5%6.8%22.7%29.47%−0.541+0.164
ATP6ATP synthase F0 subunit 6681 bp31.4%30.1%10.9%27.6%38.47%−0.435+0.021
COX3Cytochrome c oxidase subunit III784 bp27.4%30.4%14.8%27.4%42.22%−0.299−0.051
ND3NADH dehydrogenase subunit 3348 bp32.5%28.4%12.4%26.7%39.08%−0.368+0.066
ND4LNADH dehydrogenase subunit 4L297 bp28.3%34.3%11.4%25.9%37.37%−0.387−0.097
ND4NADH dehydrogenase subunit 41,378 bp32.9%28.4%10.7%28.0%38.68%−0.448+0.075
ND5NADH dehydrogenase subunit 51,830 bp33.4%28.1%10.6%27.8%38.42%−0.448+0.086
ND6NADH dehydrogenase subunit 6534 bp41.9%19.3%9.6%29.2%38.76%−0.507+0.370
CYTBCytochrome b1,140 bp30.4%28.8%12.1%28.7%40.79%−0.406+0.028
12S rRNA12S ribosomal RNA960 bp37.3%24.1%17.4%21.3%38.65%−0.100+0.216
16S rRNA16S ribosomal RNA1,577 bp37.5%25.4%16.9%20.1%37.03%−0.086+0.192
D-loopControl region (D-loop)1,034 bp34.1%26.6%12.2%27.1%39.27%−0.379+0.124

Codon usage

Counts per codon, darker is more frequent

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%
UUU103
UUC129
Leu L15.9%
UUA161
UUG16
CUU75
CUC75
CUA253
CUG27
Ile I8.8%
AUU169
AUC166
Met M6.6%
AUA214
AUG38
Val V4.9%
GUU41
GUC36
GUA88
GUG21
Ser S7.3%
UCU43
UCC77
UCA102
UCG5
AGU18
AGC34
Pro P5.0%
CCU47
CCC63
CCA82
CCG0
Thr T8.4%
ACU72
ACC97
ACA141
ACG8
Ala A6.5%
GCU51
GCC98
GCA91
GCG7
Tyr Y3.5%
UAU64
UAC68
His H2.6%
CAU53
CAC46
Gln Q2.4%
CAA80
CAG12
Asn N4.2%
AAU69
AAC91
Lys K2.6%
AAA91
AAG8
Asp D1.7%
GAU30
GAC35
Glu E2.6%
GAA77
GAG21
Cys C0.6%
UGU8
UGC15
Trp W2.8%
UGA97
UGG8
Arg R1.7%
CGU10
CGC12
CGA40
CGG1
Gly G5.6%
GGU40
GGC46
GGA100
GGG28
Stop 0.2%
UAA7
UAG1
AGA1
AGG0

Genome map

38 annotated features in NC_020645.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,029960 bp+38.7%
tRNA-ValTransfer RNA1,0301,09667 bp+–
16S rRNARibosomal RNA1,0962,6721,577 bp+37.0%
tRNA-Leu (UUR)Transfer RNA2,6732,74775 bp+–
ND1Protein-coding gene2,7503,704955 bp+39.1%
tRNA-IleTransfer RNA3,7053,77470 bp+–
tRNA-GlnTransfer RNA3,7723,84574 bp−–
tRNA-MetTransfer RNA3,8473,91569 bp+–
ND2Protein-coding gene3,9164,9571,042 bp+35.0%
tRNA-TrpTransfer RNA4,9585,02467 bp+–
tRNA-AlaTransfer RNA5,0355,10369 bp+–
tRNA-AsnTransfer RNA5,1055,17773 bp+–
tRNA-CysTransfer RNA5,2105,27667 bp−–
tRNA-TyrTransfer RNA5,2765,34469 bp−–
COX1Protein-coding gene5,3466,8901,545 bp+39.7%
tRNA-Ser (UCN)Transfer RNA6,8916,95868 bp−–
tRNA-AspTransfer RNA6,9637,02967 bp+–
COX2Protein-coding gene7,0307,713684 bp+37.6%
tRNA-LysTransfer RNA7,7177,78266 bp+–
ATP8Protein-coding gene7,7847,990207 bp+29.5%
ATP6Protein-coding gene7,9458,625681 bp+38.5%
COX3Protein-coding gene8,6259,408784 bp+42.2%
tRNA-GlyTransfer RNA9,4099,47870 bp+–
ND3Protein-coding gene9,4799,826348 bp+39.1%
tRNA-ArgTransfer RNA9,8279,89468 bp+–
ND4LProtein-coding gene9,89510,191297 bp+37.4%
ND4Protein-coding gene10,18511,5621,378 bp+38.7%
tRNA-HisTransfer RNA11,56311,63169 bp+–
tRNA-Ser (AGY)Transfer RNA11,63211,69362 bp+–
tRNA-Leu (CUN)Transfer RNA11,69411,76370 bp+–
ND5Protein-coding gene11,75513,5841,830 bp+38.4%
ND6Protein-coding gene13,56814,101534 bp−38.8%
tRNA-GluTransfer RNA14,10214,17069 bp−–
CYTBProtein-coding gene14,17515,3141,140 bp+40.8%
tRNA-ThrTransfer RNA15,31515,38268 bp+–
tRNA-ProTransfer RNA15,38315,44765 bp−–
D-loopControl region15,44816,4811,034 bp–39.3%

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