Argyrosomus japonicus

Southern meagre

Maximum lifespan

30 yr

AnAge record

mtDNA size

16,496 bp

RefSeq NC_017610.1

GC content

47.72%

Whole genome

Non-coding

896 bp

D-loop 825 bp

Where Southern meagre sits among 2,335 species

Whole-genome GC content against maximum lifespan. Southern meagre has the 444th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,496 bp

GC skew (G − C) / (G + C): −0.300
AT skew (A − T) / (A + T): +0.033

Life history

Maximum lifespan: 30 years
Adult weight: 41.3 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04338)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,496 bp

Protein-coding11,413 bp

12S rRNA948 bp

16S rRNA1,694 bp

All tRNA1,550 bp

D-loop825 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Argyrosomus japonicus genes

ND1NADH dehydrogenase subunit 1	975 bp	23.1%	27.9%	15.7%	33.3%	49.03%	−0.360	−0.095
ND2NADH dehydrogenase subunit 2	1,046 bp	25.9%	25.6%	12.4%	36.0%	48.47%	−0.487	+0.006
COX1Cytochrome c oxidase subunit I	1,557 bp	22.9%	27.9%	19.7%	29.5%	49.20%	−0.201	−0.100
COX2Cytochrome c oxidase subunit II	691 bp	27.1%	27.6%	16.4%	28.9%	45.30%	−0.278	−0.011
ATP8ATP synthase F0 subunit 8	168 bp	33.3%	23.8%	11.3%	31.5%	42.86%	−0.472	+0.167
ATP6ATP synthase F0 subunit 6	684 bp	23.5%	27.5%	14.0%	34.9%	48.98%	−0.427	−0.077
COX3Cytochrome c oxidase subunit III	785 bp	24.1%	27.9%	16.1%	32.0%	48.03%	−0.332	−0.074
ND3NADH dehydrogenase subunit 3	349 bp	18.9%	28.9%	17.2%	35.0%	52.15%	−0.341	−0.210
ND4LNADH dehydrogenase subunit 4L	297 bp	21.5%	25.3%	14.1%	39.1%	53.20%	−0.468	−0.079
ND4NADH dehydrogenase subunit 4	1,381 bp	25.1%	25.2%	15.1%	34.6%	49.67%	−0.394	−0.001
ND5NADH dehydrogenase subunit 5	1,839 bp	27.2%	25.4%	13.3%	34.0%	47.31%	−0.437	+0.034
ND6NADH dehydrogenase subunit 6	522 bp	37.7%	13.4%	13.8%	35.1%	48.85%	−0.435	+0.476
CYTBCytochrome b	1,141 bp	22.1%	27.3%	15.9%	34.7%	50.57%	−0.373	−0.106
12S rRNA12S ribosomal RNA	948 bp	30.7%	20.9%	22.3%	26.2%	48.42%	−0.081	+0.190
16S rRNA16S ribosomal RNA	1,694 bp	32.5%	20.7%	20.2%	26.6%	46.81%	−0.135	+0.223
D-loopControl region (D-loop)	825 bp	32.1%	30.5%	15.2%	22.2%	37.33%	−0.188	+0.025

Codon usage

Counts per codon, darker is more frequent

Gene

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU101

UUC137

Leu L18.1%

UUA74

UUG20

CUU153

CUC214

CUA166

CUG64

Ile I6.8%

AUU141

AUC118

Met M3.8%

AUA71

AUG73

Val V5.4%

GUU50

GUC74

GUA57

GUG26

Ser S6.0%

UCU27

UCC84

UCA58

UCG10

AGU14

AGC34

Pro P5.8%

CCU54

CCC116

CCA39

CCG12

Thr T8.3%

ACU48

ACC132

ACA122

ACG13

Ala A9.1%

GCU47

GCC195

GCA89

GCG14

Tyr Y2.9%

UAU47

UAC64

His H2.8%

CAU16

CAC90

Gln Q2.6%

CAA85

CAG13

Asn N3.2%

AAU33

AAC88

Lys K1.9%

AAA64

AAG10

Asp D2.0%

GAU17

GAC58

Glu E2.7%

GAA65

GAG36

Cys C0.6%

UGU5

UGC19

Trp W3.2%

UGA100

UGG20

Arg R2.1%

CGU9

CGC18

CGA39

CGG13

Gly G6.5%

GGU35

GGC112

GGA53

GGG46

Stop 0.2%

UAA6

UAG0

AGA1

AGG0

Genome map

38 annotated features in NC_017610.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Argyrosomus japonicus (NC_017610.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,016	948 bp	+	48.4%
tRNA-Val	Transfer RNA	1,018	1,089	72 bp	+	–
16S rRNA	Ribosomal RNA	1,091	2,784	1,694 bp	+	46.8%
tRNA-Leu (UUR)	Transfer RNA	2,786	2,859	74 bp	+	–
ND1	Protein-coding gene	2,860	3,834	975 bp	+	49.0%
tRNA-Ile	Transfer RNA	3,839	3,908	70 bp	+	–
tRNA-Gln	Transfer RNA	3,908	3,978	71 bp	−	–
tRNA-Met	Transfer RNA	3,978	4,046	69 bp	+	–
ND2	Protein-coding gene	4,047	5,092	1,046 bp	+	48.5%
tRNA-Trp	Transfer RNA	5,093	5,163	71 bp	+	–
tRNA-Ala	Transfer RNA	5,165	5,233	69 bp	−	–
tRNA-Asn	Transfer RNA	5,236	5,308	73 bp	−	–
tRNA-Cys	Transfer RNA	5,345	5,411	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,411	5,480	70 bp	−	–
COX1	Protein-coding gene	5,482	7,038	1,557 bp	+	49.2%
tRNA-Ser (UCN)	Transfer RNA	7,034	7,104	71 bp	−	–
tRNA-Asp	Transfer RNA	7,108	7,176	69 bp	+	–
COX2	Protein-coding gene	7,185	7,875	691 bp	+	45.3%
tRNA-Lys	Transfer RNA	7,876	7,949	74 bp	+	–
ATP8	Protein-coding gene	7,951	8,118	168 bp	+	42.9%
ATP6	Protein-coding gene	8,109	8,792	684 bp	+	49.0%
COX3	Protein-coding gene	8,792	9,576	785 bp	+	48.0%
tRNA-Gly	Transfer RNA	9,577	9,647	71 bp	+	–
ND3	Protein-coding gene	9,648	9,996	349 bp	+	52.2%
tRNA-Arg	Transfer RNA	9,997	10,065	69 bp	+	–
ND4L	Protein-coding gene	10,066	10,362	297 bp	+	53.2%
ND4	Protein-coding gene	10,356	11,736	1,381 bp	+	49.7%
tRNA-His	Transfer RNA	11,737	11,805	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,806	11,872	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,878	11,950	73 bp	+	–
ND5	Protein-coding gene	11,951	13,789	1,839 bp	+	47.3%
ND6	Protein-coding gene	13,786	14,307	522 bp	−	48.9%
tRNA-Glu	Transfer RNA	14,308	14,376	69 bp	+	–
CYTB	Protein-coding gene	14,381	15,521	1,141 bp	+	50.6%
tRNA-Thr	Transfer RNA	15,522	15,598	77 bp	+	–
tRNA-Pro	Transfer RNA	15,602	15,671	70 bp	−	–
D-loop	Control region	15,672	16,496	825 bp	–	37.3%