Aristaeomorpha foliacea
Giant red shrimp
GC content
33.98%
Whole genome
Non-coding
1,108 bp
D-loop 994 bp
Where Giant red shrimp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Giant red shrimp has the 1,781st longest lifespan of them.
- This species
- All other species
Base composition
Whole genome15,926 bp
- GC skew (G − C) / (G + C)
- −0.215
- AT skew (A − T) / (A + T)
- −0.004
About this record
- Lifespan source
- SeaLifeBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,926 bp
Protein-coding11,155 bp
12S rRNA845 bp
16S rRNA1,343 bp
All tRNA1,482 bp
D-loop994 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 942 bp | 35.35% | −0.297 | +0.245 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,002 bp | 34.53% | −0.289 | −0.134 | |||||
| COX1Cytochrome c oxidase subunit I | 1,531 bp | 39.19% | −0.133 | −0.108 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 37.21% | −0.078 | −0.037 | |||||
| ATP8ATP synthase F0 subunit 8 | 159 bp | 28.30% | −0.333 | +0.035 | |||||
| ATP6ATP synthase F0 subunit 6 | 675 bp | 36.44% | −0.252 | −0.138 | |||||
| COX3Cytochrome c oxidase subunit III | 792 bp | 38.76% | −0.160 | −0.163 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 33.81% | −0.143 | −0.185 | |||||
| ND4LNADH dehydrogenase subunit 4L | 300 bp | 34.67% | −0.212 | +0.316 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,341 bp | 34.97% | −0.309 | +0.250 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,732 bp | 33.43% | −0.268 | +0.160 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 32.76% | −0.376 | −0.284 | |||||
| CYTBCytochrome b | 1,137 bp | 37.38% | −0.214 | −0.174 | |||||
| 12S rRNA12S ribosomal RNA | 845 bp | 30.18% | −0.184 | −0.020 | |||||
| 16S rRNA16S ribosomal RNA | 1,343 bp | 28.00% | −0.282 | −0.059 | |||||
| D-loopControl region (D-loop) | 994 bp | 21.83% | −0.097 | −0.027 |
Codon usage
Counts per codon, darker is more frequent3,722 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F8.0%
UUU225
UUC71
Leu L15.9%
UUA233
UUG77
CUU123
CUC43
CUA83
CUG31
Ile I7.2%
AUU218
AUC49
Met M5.1%
AUA139
AUG49
Val V7.7%
GUU97
GUC35
GUA104
GUG52
Ser S9.7%
UCU119
UCC25
UCA70
UCG12
AGU40
AGC12
AGA82
AGG0
Pro P3.9%
CCU66
CCC35
CCA38
CCG8
Thr T5.7%
ACU84
ACC34
ACA83
ACG13
Ala A6.5%
GCU102
GCC69
GCA59
GCG13
Tyr Y3.7%
UAU100
UAC38
His H2.4%
CAU38
CAC52
Gln Q1.9%
CAA51
CAG19
Asn N3.4%
AAU77
AAC48
Lys K2.2%
AAA59
AAG23
Asp D2.1%
GAU55
GAC22
Glu E2.3%
GAA55
GAG29
Cys C1.1%
UGU34
UGC8
Trp W2.8%
UGA77
UGG27
Arg R1.6%
CGU13
CGC5
CGA33
CGG9
Gly G6.7%
GGU46
GGC15
GGA117
GGG70
Stop 0.2%
UAA8
UAG1
Genome map
38 annotated features in NC_039153.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (34.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| COX1 | Protein-coding gene | 4 | 1,534 | 1,531 bp | + | 39.2% |
| tRNA-Leu (UUR) | Transfer RNA | 1,535 | 1,600 | 66 bp | + | – |
| COX2 | Protein-coding gene | 1,604 | 2,291 | 688 bp | + | 37.2% |
| tRNA-Lys | Transfer RNA | 2,292 | 2,360 | 69 bp | + | – |
| tRNA-Asp | Transfer RNA | 2,364 | 2,428 | 65 bp | + | – |
| ATP8 | Protein-coding gene | 2,431 | 2,589 | 159 bp | + | 28.3% |
| ATP6 | Protein-coding gene | 2,583 | 3,257 | 675 bp | + | 36.4% |
| COX3 | Protein-coding gene | 3,261 | 4,052 | 792 bp | + | 38.8% |
| tRNA-Gly | Transfer RNA | 4,054 | 4,119 | 66 bp | + | – |
| ND3 | Protein-coding gene | 4,120 | 4,471 | 352 bp | + | 33.8% |
| tRNA-Ala | Transfer RNA | 4,472 | 4,537 | 66 bp | + | – |
| tRNA-Arg | Transfer RNA | 4,538 | 4,602 | 65 bp | + | – |
| tRNA-Asn | Transfer RNA | 4,609 | 4,674 | 66 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 4,675 | 4,742 | 68 bp | + | – |
| tRNA-Glu | Transfer RNA | 4,742 | 4,808 | 67 bp | + | – |
| tRNA-Phe | Transfer RNA | 4,826 | 4,895 | 70 bp | − | – |
| ND5 | Protein-coding gene | 4,896 | 6,627 | 1,732 bp | − | 33.4% |
| tRNA-His | Transfer RNA | 6,628 | 6,693 | 66 bp | − | – |
| ND4 | Protein-coding gene | 6,694 | 8,034 | 1,341 bp | − | 35.0% |
| ND4L | Protein-coding gene | 8,028 | 8,327 | 300 bp | − | 34.7% |
| tRNA-Thr | Transfer RNA | 8,330 | 8,396 | 67 bp | + | – |
| tRNA-Pro | Transfer RNA | 8,397 | 8,462 | 66 bp | − | – |
| ND6 | Protein-coding gene | 8,464 | 8,982 | 519 bp | + | 32.8% |
| CYTB | Protein-coding gene | 8,982 | 10,118 | 1,137 bp | + | 37.4% |
| tRNA-Ser (UCN) | Transfer RNA | 10,117 | 10,186 | 70 bp | + | – |
| ND1 | Protein-coding gene | 10,204 | 11,145 | 942 bp | − | 35.4% |
| tRNA-Leu (CUN) | Transfer RNA | 11,148 | 11,216 | 69 bp | − | – |
| 16S rRNA | Ribosomal RNA | 11,214 | 12,556 | 1,343 bp | − | 28.0% |
| tRNA-Val | Transfer RNA | 12,556 | 12,627 | 72 bp | − | – |
| 12S rRNA | Ribosomal RNA | 12,631 | 13,475 | 845 bp | − | 30.2% |
| D-loop | Control region | 13,476 | 14,469 | 994 bp | – | 21.8% |
| tRNA-Ile | Transfer RNA | 14,470 | 14,536 | 67 bp | + | – |
| tRNA-Gln | Transfer RNA | 14,556 | 14,628 | 73 bp | − | – |
| tRNA-Met | Transfer RNA | 14,649 | 14,716 | 68 bp | + | – |
| ND2 | Protein-coding gene | 14,717 | 15,718 | 1,002 bp | + | 34.5% |
| tRNA-Trp | Transfer RNA | 15,718 | 15,785 | 68 bp | + | – |
| tRNA-Cys | Transfer RNA | 15,796 | 15,859 | 64 bp | − | – |
| tRNA-Tyr | Transfer RNA | 15,861 | 15,925 | 65 bp | − | – |