Aulorhynchus flavidus
Tube-snout
GC content
40.06%
Whole genome
Non-coding
1,342 bp
D-loop 1,098 bp
Where Tube-snout sits among 2,335 species
Whole-genome GC content against maximum lifespan. Tube-snout has the 1,676th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,894 bp
- GC skew (G − C) / (G + C)
- −0.259
- AT skew (A − T) / (A + T)
- −0.006
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,894 bp
Protein-coding11,402 bp
12S rRNA941 bp
16S rRNA1,677 bp
All tRNA1,533 bp
D-loop1,098 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 38.15% | −0.296 | −0.134 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 38.97% | −0.426 | −0.070 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 40.68% | −0.195 | −0.130 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.52% | −0.271 | −0.002 | |||||
| ATP8ATP synthase F0 subunit 8 | 166 bp | 39.16% | −0.600 | −0.010 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 35.58% | −0.391 | −0.123 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.82% | −0.279 | −0.134 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 39.83% | −0.381 | −0.152 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 42.09% | −0.344 | −0.163 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 38.96% | −0.361 | −0.065 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 37.41% | −0.358 | −0.044 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 39.46% | −0.456 | +0.342 | |||||
| CYTBCytochrome b | 1,135 bp | 37.80% | −0.310 | −0.127 | |||||
| 12S rRNA12S ribosomal RNA | 941 bp | 46.23% | −0.090 | +0.198 | |||||
| 16S rRNA16S ribosomal RNA | 1,677 bp | 42.82% | −0.075 | +0.195 | |||||
| D-loopControl region (D-loop) | 1,098 bp | 35.16% | −0.181 | +0.048 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.5%
UUU163
UUC85
Leu L16.5%
UUA188
UUG19
CUU192
CUC72
CUA140
CUG18
Ile I7.9%
AUU192
AUC110
Met M4.4%
AUA132
AUG36
Val V5.3%
GUU73
GUC31
GUA83
GUG13
Ser S6.9%
UCU78
UCC53
UCA71
UCG2
AGU27
AGC32
Pro P5.5%
CCU104
CCC65
CCA39
CCG1
Thr T8.2%
ACU112
ACC79
ACA114
ACG6
Ala A8.3%
GCU135
GCC84
GCA96
GCG2
Tyr Y2.9%
UAU54
UAC57
His H2.8%
CAU34
CAC71
Gln Q2.7%
CAA98
CAG5
Asn N3.5%
AAU57
AAC76
Lys K1.9%
AAA71
AAG3
Asp D1.9%
GAU30
GAC44
Glu E2.5%
GAA86
GAG8
Cys C0.8%
UGU23
UGC7
Trp W3.0%
UGA109
UGG7
Arg R1.9%
CGU17
CGC8
CGA44
CGG3
Gly G6.3%
GGU72
GGC52
GGA89
GGG26
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_010268.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (40.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,009 | 941 bp | + | 46.2% |
| tRNA-Val | Transfer RNA | 1,010 | 1,080 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,083 | 2,759 | 1,677 bp | + | 42.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,760 | 2,833 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,834 | 3,808 | 975 bp | + | 38.2% |
| tRNA-Ile | Transfer RNA | 3,813 | 3,882 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,882 | 3,952 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,952 | 4,020 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,021 | 5,067 | 1,047 bp | + | 39.0% |
| tRNA-Trp | Transfer RNA | 5,067 | 5,135 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,137 | 5,205 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,207 | 5,279 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,319 | 5,383 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,384 | 5,450 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,452 | 7,002 | 1,551 bp | + | 40.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,003 | 7,073 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,077 | 7,149 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,162 | 7,852 | 691 bp | + | 40.5% |
| tRNA-Lys | Transfer RNA | 7,853 | 7,926 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,928 | 8,093 | 166 bp | + | 39.2% |
| ATP6 | Protein-coding gene | 8,086 | 8,768 | 683 bp | + | 35.6% |
| COX3 | Protein-coding gene | 8,769 | 9,553 | 785 bp | + | 43.8% |
| tRNA-Gly | Transfer RNA | 9,558 | 9,623 | 66 bp | + | – |
| ND3 | Protein-coding gene | 9,624 | 9,972 | 349 bp | + | 39.8% |
| tRNA-Arg | Transfer RNA | 9,973 | 10,041 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,042 | 10,338 | 297 bp | + | 42.1% |
| ND4 | Protein-coding gene | 10,332 | 11,712 | 1,381 bp | + | 39.0% |
| tRNA-Ser (AGY) | Transfer RNA | 11,772 | 11,839 | 68 bp | + | – |
| tRNA-His | Transfer RNA | 11,903 | 11,972 | 70 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,014 | 12,086 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,087 | 13,925 | 1,839 bp | + | 37.4% |
| ND6 | Protein-coding gene | 13,922 | 14,443 | 522 bp | − | 39.5% |
| tRNA-Glu | Transfer RNA | 14,444 | 14,513 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,517 | 15,651 | 1,135 bp | + | 37.8% |
| tRNA-Thr | Transfer RNA | 15,662 | 15,732 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,727 | 15,796 | 70 bp | − | – |
| D-loop | Control region | 15,797 | 16,894 | 1,098 bp | – | 35.2% |