Austroglanis gilli
Clanwilliam catfish
GC content
43.46%
Whole genome
Non-coding
969 bp
D-loop 885 bp
Where Clanwilliam catfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Clanwilliam catfish has the 1,452nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,561 bp
- GC skew (G − C) / (G + C)
- −0.282
- AT skew (A − T) / (A + T)
- +0.073
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,561 bp
Protein-coding11,387 bp
12S rRNA964 bp
16S rRNA1,684 bp
All tRNA1,558 bp
D-loop885 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.33% | −0.357 | +0.002 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 43.45% | −0.419 | +0.117 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.07% | −0.177 | −0.055 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.85% | −0.267 | +0.046 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.10% | −0.406 | +0.154 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.84% | −0.392 | +0.059 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 47.07% | −0.252 | −0.022 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.27% | −0.329 | −0.099 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.352 | −0.026 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.43% | −0.392 | +0.057 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,827 bp | 42.58% | −0.414 | +0.064 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 46.82% | −0.547 | +0.449 | |||||
| CYTBCytochrome b | 1,138 bp | 43.32% | −0.363 | −0.036 | |||||
| 12S rRNA12S ribosomal RNA | 964 bp | 46.99% | −0.113 | +0.174 | |||||
| 16S rRNA16S ribosomal RNA | 1,684 bp | 43.53% | −0.102 | +0.247 | |||||
| D-loopControl region (D-loop) | 885 bp | 35.48% | −0.191 | +0.012 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU112
UUC120
Leu L16.7%
UUA129
UUG28
CUU58
CUC122
CUA259
CUG37
Ile I7.5%
AUU176
AUC110
Met M4.9%
AUA140
AUG46
Val V5.6%
GUU62
GUC30
GUA90
GUG31
Ser S5.8%
UCU31
UCC71
UCA65
UCG9
AGU14
AGC32
Pro P5.7%
CCU36
CCC92
CCA81
CCG6
Thr T8.2%
ACU48
ACC128
ACA124
ACG11
Ala A8.8%
GCU52
GCC168
GCA103
GCG11
Tyr Y3.0%
UAU66
UAC48
His H2.9%
CAU29
CAC80
Gln Q2.6%
CAA85
CAG14
Asn N3.3%
AAU61
AAC63
Lys K2.1%
AAA72
AAG7
Asp D2.0%
GAU25
GAC52
Glu E2.5%
GAA81
GAG15
Cys C0.7%
UGU7
UGC20
Trp W3.2%
UGA104
UGG18
Arg R1.9%
CGU5
CGC19
CGA42
CGG8
Gly G6.3%
GGU28
GGC75
GGA94
GGG44
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_061919.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,033 | 964 bp | + | 47.0% |
| tRNA-Val | Transfer RNA | 1,034 | 1,105 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,106 | 2,789 | 1,684 bp | + | 43.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,789 | 2,863 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,864 | 3,838 | 975 bp | + | 45.3% |
| tRNA-Ile | Transfer RNA | 3,845 | 3,916 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,916 | 3,986 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,986 | 4,055 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,056 | 5,100 | 1,045 bp | + | 43.5% |
| tRNA-Trp | Transfer RNA | 5,101 | 5,172 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,175 | 5,243 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,245 | 5,317 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,354 | 5,419 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,422 | 5,491 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,493 | 7,043 | 1,551 bp | + | 43.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,044 | 7,114 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,119 | 7,190 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,205 | 7,895 | 691 bp | + | 43.9% |
| tRNA-Lys | Transfer RNA | 7,896 | 7,969 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,971 | 8,138 | 168 bp | + | 38.1% |
| ATP6 | Protein-coding gene | 8,129 | 8,812 | 684 bp | + | 42.8% |
| COX3 | Protein-coding gene | 8,812 | 9,595 | 784 bp | + | 47.1% |
| tRNA-Gly | Transfer RNA | 9,596 | 9,668 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,669 | 10,017 | 349 bp | + | 45.3% |
| tRNA-Arg | Transfer RNA | 10,018 | 10,088 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,089 | 10,385 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,379 | 11,759 | 1,381 bp | + | 42.4% |
| tRNA-His | Transfer RNA | 11,760 | 11,829 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,830 | 11,896 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,899 | 11,971 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,972 | 13,798 | 1,827 bp | + | 42.6% |
| ND6 | Protein-coding gene | 13,795 | 14,313 | 519 bp | − | 46.8% |
| tRNA-Glu | Transfer RNA | 14,314 | 14,382 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,384 | 15,521 | 1,138 bp | + | 43.3% |
| tRNA-Thr | Transfer RNA | 15,522 | 15,594 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,593 | 15,662 | 70 bp | − | – |
| D-loop | Control region | 15,677 | 16,561 | 885 bp | – | 35.5% |