Auxis thazard
Frigate tuna
GC content
47.24%
Whole genome
Non-coding
910 bp
D-loop 847 bp
Where Frigate tuna sits among 2,335 species
Whole-genome GC content against maximum lifespan. Frigate tuna has the 1,988th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,506 bp
- GC skew (G − C) / (G + C)
- −0.271
- AT skew (A − T) / (A + T)
- +0.055
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,506 bp
Protein-coding11,408 bp
12S rRNA946 bp
16S rRNA1,692 bp
All tRNA1,550 bp
D-loop847 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.44% | −0.365 | −0.014 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 49.95% | −0.381 | +0.057 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.81% | −0.198 | −0.062 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.43% | −0.257 | +0.031 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.475 | +0.159 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.37% | −0.401 | −0.033 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.54% | −0.286 | −0.015 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.29% | −0.341 | −0.106 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.87% | −0.375 | −0.124 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.10% | −0.357 | +0.018 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.09% | −0.388 | +0.038 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.47% | −0.352 | +0.390 | |||||
| CYTBCytochrome b | 1,141 bp | 48.20% | −0.360 | −0.036 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 49.26% | −0.090 | +0.175 | |||||
| 16S rRNA16S ribosomal RNA | 1,692 bp | 45.75% | −0.098 | +0.218 | |||||
| D-loopControl region (D-loop) | 847 bp | 37.90% | −0.153 | +0.057 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU55
UUC177
Leu L17.1%
UUA54
UUG12
CUU127
CUC142
CUA244
CUG74
Ile I7.1%
AUU131
AUC138
Met M4.0%
AUA47
AUG107
Val V5.9%
GUU62
GUC65
GUA78
GUG21
Ser S6.1%
UCU49
UCC69
UCA58
UCG6
AGU8
AGC44
Pro P5.9%
CCU65
CCC86
CCA62
CCG10
Thr T8.0%
ACU46
ACC117
ACA117
ACG23
Ala A9.5%
GCU66
GCC166
GCA111
GCG17
Tyr Y2.9%
UAU23
UAC87
His H2.8%
CAU14
CAC92
Gln Q2.4%
CAA73
CAG20
Asn N3.1%
AAU32
AAC87
Lys K1.9%
AAA69
AAG4
Asp D2.0%
GAU20
GAC57
Glu E2.8%
GAA82
GAG23
Cys C0.7%
UGU3
UGC22
Trp W3.1%
UGA101
UGG18
Arg R2.0%
CGU6
CGC9
CGA49
CGG12
Gly G6.4%
GGU38
GGC85
GGA81
GGG39
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_005318.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| D-loop | Control region | 1 | 847 | 847 bp | – | 37.9% |
| tRNA-Phe | Transfer RNA | 848 | 915 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 916 | 1,861 | 946 bp | + | 49.3% |
| tRNA-Val | Transfer RNA | 1,862 | 1,933 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,934 | 3,625 | 1,692 bp | + | 45.8% |
| tRNA-Leu (UUR) | Transfer RNA | 3,626 | 3,699 | 74 bp | + | – |
| ND1 | Protein-coding gene | 3,700 | 4,674 | 975 bp | + | 49.4% |
| tRNA-Ile | Transfer RNA | 4,679 | 4,749 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,749 | 4,819 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,819 | 4,887 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,888 | 5,934 | 1,047 bp | + | 50.0% |
| tRNA-Trp | Transfer RNA | 5,935 | 6,005 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 6,007 | 6,075 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 6,078 | 6,150 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 6,186 | 6,253 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 6,254 | 6,320 | 67 bp | − | – |
| COX1 | Protein-coding gene | 6,322 | 7,872 | 1,551 bp | + | 46.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,873 | 7,943 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,947 | 8,019 | 73 bp | + | – |
| COX2 | Protein-coding gene | 8,028 | 8,718 | 691 bp | + | 44.4% |
| tRNA-Lys | Transfer RNA | 8,719 | 8,792 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,794 | 8,961 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,952 | 9,635 | 684 bp | + | 47.4% |
| COX3 | Protein-coding gene | 9,635 | 10,419 | 785 bp | + | 48.5% |
| tRNA-Gly | Transfer RNA | 10,420 | 10,490 | 71 bp | + | – |
| ND3 | Protein-coding gene | 10,491 | 10,839 | 349 bp | + | 51.3% |
| tRNA-Arg | Transfer RNA | 10,840 | 10,908 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,909 | 11,205 | 297 bp | + | 53.9% |
| ND4 | Protein-coding gene | 11,199 | 12,579 | 1,381 bp | + | 49.1% |
| tRNA-His | Transfer RNA | 12,580 | 12,649 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,650 | 12,717 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,722 | 12,794 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,795 | 14,633 | 1,839 bp | + | 47.1% |
| ND6 | Protein-coding gene | 14,630 | 15,151 | 522 bp | − | 48.5% |
| tRNA-Glu | Transfer RNA | 15,152 | 15,220 | 69 bp | − | – |
| CYTB | Protein-coding gene | 15,225 | 16,365 | 1,141 bp | + | 48.2% |
| tRNA-Thr | Transfer RNA | 16,366 | 16,437 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 16,437 | 16,506 | 70 bp | − | – |