Bagrus docmak
Semutundu
GC content
41.20%
Whole genome
Non-coding
287 bp
Including the D-loop
Where Semutundu sits among 2,335 species
Whole-genome GC content against maximum lifespan. Semutundu has the 2,048th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome12,946 bp
- GC skew (G − C) / (G + C)
- −0.331
- AT skew (A − T) / (A + T)
- +0.072
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome12,946 bp
Protein-coding11,383 bp
All tRNA1,276 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 974 bp | 41.99% | −0.403 | +0.030 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 41.24% | −0.480 | +0.205 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.36% | −0.199 | −0.038 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.09% | −0.227 | +0.058 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.10% | −0.313 | +0.135 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 38.45% | −0.354 | +0.055 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 42.60% | −0.257 | −0.022 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 39.54% | −0.304 | −0.052 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.371 | +0.032 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 39.39% | −0.342 | +0.066 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,827 bp | 40.12% | −0.416 | +0.075 | |||||
| ND6NADH dehydrogenase subunit 6 | 516 bp | 43.02% | −0.595 | +0.463 | |||||
| CYTBCytochrome b | 1,138 bp | 41.48% | −0.373 | +0.024 |
Codon usage
Counts per codon, darker is more frequent3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU106
UUC122
Leu L16.6%
UUA154
UUG21
CUU76
CUC67
CUA290
CUG23
Ile I8.3%
AUU197
AUC117
Met M4.8%
AUA149
AUG35
Val V5.3%
GUU51
GUC34
GUA100
GUG15
Ser S5.9%
UCU28
UCC63
UCA87
UCG2
AGU10
AGC34
Pro P5.5%
CCU34
CCC46
CCA119
CCG9
Thr T7.9%
ACU58
ACC102
ACA137
ACG4
Ala A8.6%
GCU62
GCC135
GCA123
GCG8
Tyr Y3.1%
UAU52
UAC64
His H2.8%
CAU29
CAC79
Gln Q2.6%
CAA92
CAG5
Asn N3.5%
AAU56
AAC78
Lys K2.2%
AAA75
AAG8
Asp D2.0%
GAU27
GAC48
Glu E2.6%
GAA84
GAG14
Cys C0.7%
UGU15
UGC13
Trp W3.2%
UGA103
UGG18
Arg R1.9%
CGU6
CGC14
CGA52
CGG2
Gly G6.3%
GGU50
GGC63
GGA98
GGG30
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
31 annotated features in NC_061386.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- tRNA18
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 31 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Leu (UUR) | Transfer RNA | 188 | 262 | 75 bp | + | – |
| ND1 | Protein-coding gene | 263 | 1,236 | 974 bp | + | 42.0% |
| tRNA-Ile | Transfer RNA | 1,237 | 1,308 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 1,308 | 1,378 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 1,378 | 1,447 | 70 bp | + | – |
| ND2 | Protein-coding gene | 1,448 | 2,492 | 1,045 bp | + | 41.2% |
| tRNA-Trp | Transfer RNA | 2,493 | 2,563 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 2,566 | 2,634 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 2,636 | 2,708 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 2,739 | 2,804 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 2,807 | 2,877 | 71 bp | − | – |
| COX1 | Protein-coding gene | 2,879 | 4,429 | 1,551 bp | + | 42.4% |
| tRNA-Ser (UCN) | Transfer RNA | 4,430 | 4,500 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 4,505 | 4,577 | 73 bp | + | – |
| COX2 | Protein-coding gene | 4,592 | 5,282 | 691 bp | + | 40.1% |
| tRNA-Lys | Transfer RNA | 5,283 | 5,356 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 5,358 | 5,525 | 168 bp | + | 38.1% |
| ATP6 | Protein-coding gene | 5,516 | 6,199 | 684 bp | + | 38.5% |
| COX3 | Protein-coding gene | 6,199 | 6,982 | 784 bp | + | 42.6% |
| tRNA-Gly | Transfer RNA | 6,983 | 7,055 | 73 bp | + | – |
| ND3 | Protein-coding gene | 7,056 | 7,404 | 349 bp | + | 39.5% |
| tRNA-Arg | Transfer RNA | 7,405 | 7,473 | 69 bp | + | – |
| ND4L | Protein-coding gene | 7,474 | 7,770 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 7,764 | 9,144 | 1,381 bp | + | 39.4% |
| tRNA-His | Transfer RNA | 9,145 | 9,214 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 9,215 | 9,282 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 9,287 | 9,359 | 73 bp | + | – |
| ND5 | Protein-coding gene | 9,360 | 11,186 | 1,827 bp | + | 40.1% |
| ND6 | Protein-coding gene | 11,183 | 11,698 | 516 bp | − | 43.0% |
| tRNA-Glu | Transfer RNA | 11,699 | 11,767 | 69 bp | − | – |
| CYTB | Protein-coding gene | 11,770 | 12,907 | 1,138 bp | + | 41.5% |