Bathymaster signatus
Searcher
GC content
44.24%
Whole genome
Non-coding
921 bp
Including the D-loop
Where Searcher sits among 2,335 species
Whole-genome GC content against maximum lifespan. Searcher has the 1,678th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,517 bp
- GC skew (G − C) / (G + C)
- −0.209
- AT skew (A − T) / (A + T)
- −0.038
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,517 bp
Protein-coding11,407 bp
12S rRNA944 bp
16S rRNA1,695 bp
All tRNA1,550 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.15% | −0.280 | −0.192 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 46.46% | −0.346 | −0.089 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.62% | −0.171 | −0.142 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.82% | −0.197 | −0.055 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.493 | +0.072 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.81% | −0.357 | −0.131 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.24% | −0.234 | −0.128 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.69% | −0.221 | −0.190 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.229 | −0.261 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.52% | −0.265 | −0.121 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.28% | −0.269 | −0.112 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.64% | −0.339 | +0.308 | |||||
| CYTBCytochrome b | 1,141 bp | 44.44% | −0.266 | −0.170 | |||||
| 12S rRNA12S ribosomal RNA | 944 bp | 48.09% | −0.084 | +0.176 | |||||
| 16S rRNA16S ribosomal RNA | 1,695 bp | 45.07% | −0.063 | +0.175 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU132
UUC98
Leu L17.1%
UUA117
UUG27
CUU222
CUC103
CUA129
CUG52
Ile I7.0%
AUU182
AUC85
Met M3.9%
AUA75
AUG73
Val V6.3%
GUU109
GUC32
GUA72
GUG28
Ser S6.4%
UCU53
UCC64
UCA60
UCG14
AGU19
AGC35
Pro P5.8%
CCU90
CCC73
CCA51
CCG7
Thr T7.9%
ACU77
ACC108
ACA97
ACG20
Ala A9.1%
GCU92
GCC141
GCA97
GCG15
Tyr Y2.9%
UAU57
UAC55
His H2.8%
CAU53
CAC53
Gln Q2.6%
CAA75
CAG24
Asn N3.0%
AAU62
AAC53
Lys K1.9%
AAA56
AAG16
Asp D2.0%
GAU43
GAC33
Glu E2.6%
GAA69
GAG29
Cys C0.7%
UGU11
UGC14
Trp W3.2%
UGA93
UGG28
Arg R2.0%
CGU19
CGC13
CGA36
CGG9
Gly G6.6%
GGU48
GGC78
GGA77
GGG47
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
37 annotated features in NC_083046.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,012 | 944 bp | + | 48.1% |
| tRNA-Val | Transfer RNA | 1,013 | 1,084 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,085 | 2,779 | 1,695 bp | + | 45.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 46.2% |
| tRNA-Ile | Transfer RNA | 3,833 | 3,902 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,902 | 3,972 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,040 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,041 | 5,086 | 1,046 bp | + | 46.5% |
| tRNA-Trp | Transfer RNA | 5,087 | 5,157 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,159 | 5,227 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,229 | 5,301 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,406 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,407 | 5,477 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,479 | 7,029 | 1,551 bp | + | 42.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,030 | 7,100 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,104 | 7,175 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,185 | 7,875 | 691 bp | + | 41.8% |
| tRNA-Lys | Transfer RNA | 7,876 | 7,949 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,951 | 8,118 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 8,109 | 8,792 | 684 bp | + | 41.8% |
| COX3 | Protein-coding gene | 8,792 | 9,576 | 785 bp | + | 46.2% |
| tRNA-Gly | Transfer RNA | 9,577 | 9,648 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,649 | 9,997 | 349 bp | + | 42.7% |
| tRNA-Arg | Transfer RNA | 9,998 | 10,066 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,067 | 10,363 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,357 | 11,737 | 1,381 bp | + | 43.5% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,807 | 11,874 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,879 | 11,951 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,952 | 13,790 | 1,839 bp | + | 43.3% |
| ND6 | Protein-coding gene | 13,787 | 14,308 | 522 bp | − | 44.6% |
| tRNA-Glu | Transfer RNA | 14,309 | 14,377 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,383 | 15,523 | 1,141 bp | + | 44.4% |
| tRNA-Thr | Transfer RNA | 15,524 | 15,595 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,595 | 15,664 | 70 bp | − | – |