Beryx splendens
Alfonsino
GC content
47.30%
Whole genome
Non-coding
926 bp
D-loop 865 bp
Where Alfonsino sits among 2,335 species
Whole-genome GC content against maximum lifespan. Alfonsino has the 724th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,529 bp
- GC skew (G − C) / (G + C)
- −0.301
- AT skew (A − T) / (A + T)
- +0.074
Life history
- Maximum lifespan
- 23 years
- Female sexual maturity
- 5.9 years
- Male sexual maturity
- 7.5 years
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03813)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,529 bp
Protein-coding11,406 bp
12S rRNA949 bp
16S rRNA1,694 bp
All tRNA1,554 bp
D-loop865 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.85% | −0.379 | +0.002 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 51.34% | −0.456 | +0.073 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.10% | −0.212 | −0.039 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.43% | −0.270 | +0.031 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 49.41% | −0.614 | +0.224 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 48.17% | −0.422 | −0.017 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.39% | −0.301 | −0.022 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.00% | −0.404 | −0.170 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.52% | −0.386 | −0.083 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.72% | −0.396 | +0.044 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.53% | −0.432 | +0.090 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.36% | −0.413 | +0.450 | |||||
| CYTBCytochrome b | 1,141 bp | 47.77% | −0.387 | +0.003 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 49.53% | −0.106 | +0.190 | |||||
| 16S rRNA16S ribosomal RNA | 1,694 bp | 45.69% | −0.121 | +0.243 | |||||
| D-loopControl region (D-loop) | 865 bp | 38.84% | −0.202 | +0.013 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU86
UUC138
Leu L17.4%
UUA66
UUG16
CUU120
CUC169
CUA239
CUG51
Ile I7.0%
AUU120
AUC147
Met M4.3%
AUA92
AUG72
Val V5.6%
GUU51
GUC71
GUA76
GUG17
Ser S6.1%
UCU41
UCC74
UCA60
UCG4
AGU9
AGC45
Pro P5.8%
CCU41
CCC116
CCA51
CCG14
Thr T8.1%
ACU40
ACC147
ACA112
ACG10
Ala A9.1%
GCU49
GCC191
GCA89
GCG19
Tyr Y2.9%
UAU31
UAC81
His H2.8%
CAU21
CAC85
Gln Q2.7%
CAA91
CAG11
Asn N3.2%
AAU24
AAC99
Lys K1.9%
AAA66
AAG6
Asp D2.0%
GAU17
GAC61
Glu E2.6%
GAA75
GAG24
Cys C0.7%
UGU5
UGC20
Trp W3.1%
UGA103
UGG16
Arg R2.0%
CGU6
CGC14
CGA44
CGG12
Gly G6.4%
GGU25
GGC81
GGA88
GGG51
Stop 0.2%
UAA5
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_003188.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,017 | 949 bp | + | 49.5% |
| tRNA-Val | Transfer RNA | 1,018 | 1,090 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,784 | 1,694 bp | + | 45.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,785 | 2,858 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 49.9% |
| tRNA-Ile | Transfer RNA | 3,840 | 3,911 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,910 | 3,980 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,980 | 4,048 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,049 | 5,094 | 1,046 bp | + | 51.3% |
| tRNA-Trp | Transfer RNA | 5,095 | 5,167 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,169 | 5,237 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,239 | 5,311 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,343 | 5,408 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,476 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,478 | 7,028 | 1,551 bp | + | 48.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,029 | 7,100 | 72 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,103 | 7,174 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,188 | 7,878 | 691 bp | + | 44.4% |
| tRNA-Lys | Transfer RNA | 7,879 | 7,953 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,955 | 8,122 | 168 bp | + | 49.4% |
| ATP6 | Protein-coding gene | 8,113 | 8,795 | 683 bp | + | 48.2% |
| COX3 | Protein-coding gene | 8,796 | 9,580 | 785 bp | + | 47.4% |
| tRNA-Gly | Transfer RNA | 9,581 | 9,652 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,653 | 10,001 | 349 bp | + | 51.0% |
| tRNA-Arg | Transfer RNA | 10,002 | 10,071 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,072 | 10,368 | 297 bp | + | 51.5% |
| ND4 | Protein-coding gene | 10,362 | 11,742 | 1,381 bp | + | 47.7% |
| tRNA-His | Transfer RNA | 11,743 | 11,811 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,812 | 11,879 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,881 | 11,953 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,954 | 13,792 | 1,839 bp | + | 47.5% |
| ND6 | Protein-coding gene | 13,788 | 14,309 | 522 bp | − | 46.4% |
| tRNA-Glu | Transfer RNA | 14,310 | 14,378 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,383 | 15,523 | 1,141 bp | + | 47.8% |
| tRNA-Thr | Transfer RNA | 15,524 | 15,595 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,595 | 15,664 | 70 bp | − | – |
| D-loop | Control region | 15,665 | 16,529 | 865 bp | – | 38.8% |