Boreogadus saida

Arctic cod

Maximum lifespan

7 yr

AnAge record

mtDNA size

16,745 bp

RefSeq NC_010121.1

GC content

42.27%

Whole genome

Non-coding

1,184 bp

D-loop 861 bp

Where Arctic cod sits among 2,335 species

Whole-genome GC content against maximum lifespan. Arctic cod has the 1,813th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,745 bp

GC skew (G − C) / (G + C): −0.208
AT skew (A − T) / (A + T): −0.026

Life history

Maximum lifespan: 7 years
Male sexual maturity: 2.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04016)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,745 bp

Protein-coding11,406 bp

12S rRNA951 bp

16S rRNA1,664 bp

All tRNA1,540 bp

D-loop861 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Boreogadus saida genes

ND1NADH dehydrogenase subunit 1	975 bp	24.4%	32.4%	15.9%	27.3%	43.18%	−0.264	−0.141
ND2NADH dehydrogenase subunit 2	1,045 bp	27.9%	31.9%	13.4%	26.8%	40.19%	−0.333	−0.066
COX1Cytochrome c oxidase subunit I	1,551 bp	25.2%	32.4%	17.5%	25.0%	42.42%	−0.176	−0.124
COX2Cytochrome c oxidase subunit II	691 bp	29.5%	31.1%	15.8%	23.6%	39.36%	−0.199	−0.026
ATP8ATP synthase F0 subunit 8	168 bp	31.5%	27.4%	8.9%	32.1%	41.07%	−0.565	+0.071
ATP6ATP synthase F0 subunit 6	683 bp	25.9%	35.1%	12.6%	26.4%	38.95%	−0.353	−0.151
COX3Cytochrome c oxidase subunit III	786 bp	25.7%	31.6%	16.9%	25.8%	42.75%	−0.208	−0.102
ND3NADH dehydrogenase subunit 3	349 bp	23.8%	35.0%	15.2%	26.1%	41.26%	−0.264	−0.190
ND4LNADH dehydrogenase subunit 4L	297 bp	23.2%	30.6%	15.2%	31.0%	46.13%	−0.343	−0.138
ND4NADH dehydrogenase subunit 4	1,381 bp	26.9%	32.6%	14.5%	26.1%	40.55%	−0.286	−0.096
ND5NADH dehydrogenase subunit 5	1,839 bp	27.2%	31.5%	15.4%	25.9%	41.33%	−0.253	−0.073
ND6NADH dehydrogenase subunit 6	522 bp	37.5%	18.4%	14.6%	29.5%	44.06%	−0.339	+0.342
CYTBCytochrome b	1,141 bp	24.1%	34.0%	16.0%	25.9%	41.89%	−0.238	−0.170
12S rRNA12S ribosomal RNA	951 bp	32.0%	22.3%	22.1%	23.7%	45.74%	−0.034	+0.178
16S rRNA16S ribosomal RNA	1,664 bp	32.8%	23.3%	20.6%	23.3%	43.87%	−0.063	+0.169
D-loopControl region (D-loop)	861 bp	31.1%	33.9%	13.6%	21.4%	34.96%	−0.223	−0.043

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU136

UUC97

Leu L17.3%

UUA165

UUG26

CUU189

CUC86

CUA162

CUG30

Ile I6.7%

AUU180

AUC76

Met M4.6%

AUA129

AUG48

Val V6.0%

GUU79

GUC40

GUA86

GUG23

Ser S6.8%

UCU73

UCC36

UCA73

UCG11

AGU26

AGC38

Pro P5.6%

CCU95

CCC73

CCA40

CCG7

Thr T7.7%

ACU81

ACC83

ACA117

ACG12

Ala A9.3%

GCU109

GCC114

GCA119

GCG11

Tyr Y2.8%

UAU65

UAC43

His H2.8%

CAU49

CAC57

Gln Q2.5%

CAA79

CAG15

Asn N2.9%

AAU70

AAC39

Lys K1.9%

AAA58

AAG13

Asp D2.1%

GAU43

GAC36

Glu E2.5%

GAA65

GAG32

Cys C0.7%

UGU18

UGC9

Trp W3.2%

UGA109

UGG11

Arg R2.0%

CGU18

CGC15

CGA28

CGG14

Gly G6.4%

GGU59

GGC71

GGA75

GGG39

Stop 0.2%

UAA4

UAG2

AGA0

AGG1

Genome map

38 annotated features in NC_010121.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (42.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Boreogadus saida (NC_010121.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,019	951 bp	+	45.7%
tRNA-Val	Transfer RNA	1,020	1,091	72 bp	+	–
16S rRNA	Ribosomal RNA	1,092	2,755	1,664 bp	+	43.9%
tRNA-Leu (UUR)	Transfer RNA	2,756	2,829	74 bp	+	–
ND1	Protein-coding gene	2,830	3,804	975 bp	+	43.2%
tRNA-Ile	Transfer RNA	3,806	3,875	70 bp	+	–
tRNA-Gln	Transfer RNA	3,875	3,945	71 bp	−	–
tRNA-Met	Transfer RNA	3,945	4,014	70 bp	+	–
ND2	Protein-coding gene	4,015	5,059	1,045 bp	+	40.2%
tRNA-Trp	Transfer RNA	5,060	5,129	70 bp	+	–
tRNA-Ala	Transfer RNA	5,131	5,199	69 bp	−	–
tRNA-Asn	Transfer RNA	5,393	5,465	73 bp	−	–
tRNA-Cys	Transfer RNA	5,498	5,564	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,565	5,631	67 bp	−	–
COX1	Protein-coding gene	5,633	7,183	1,551 bp	+	42.4%
tRNA-Ser (UCN)	Transfer RNA	7,186	7,256	71 bp	−	–
tRNA-Asp	Transfer RNA	7,260	7,327	68 bp	+	–
COX2	Protein-coding gene	7,341	8,031	691 bp	+	39.4%
tRNA-Lys	Transfer RNA	8,032	8,105	74 bp	+	–
ATP8	Protein-coding gene	8,107	8,274	168 bp	+	41.1%
ATP6	Protein-coding gene	8,265	8,947	683 bp	+	39.0%
COX3	Protein-coding gene	8,948	9,733	786 bp	+	42.8%
tRNA-Gly	Transfer RNA	9,734	9,802	69 bp	+	–
ND3	Protein-coding gene	9,803	10,151	349 bp	+	41.3%
tRNA-Arg	Transfer RNA	10,152	10,220	69 bp	+	–
ND4L	Protein-coding gene	10,221	10,517	297 bp	+	46.1%
ND4	Protein-coding gene	10,511	11,891	1,381 bp	+	40.6%
tRNA-His	Transfer RNA	11,892	11,960	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,961	12,028	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	12,031	12,103	73 bp	+	–
ND5	Protein-coding gene	12,104	13,942	1,839 bp	+	41.3%
ND6	Protein-coding gene	13,938	14,459	522 bp	−	44.1%
tRNA-Glu	Transfer RNA	14,460	14,528	69 bp	−	–
CYTB	Protein-coding gene	14,533	15,673	1,141 bp	+	41.9%
tRNA-Thr	Transfer RNA	15,674	15,744	71 bp	+	–
tRNA-Pro	Transfer RNA	15,815	15,884	70 bp	−	–
D-loop	Control region	15,885	16,745	861 bp	–	35.0%