MitoAge

Branchiostegus japonicus

Red tilefish

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Maximum lifespan
12 yr
AnAge record
mtDNA size
16,541 bp
RefSeq NC_012904.1
GC content
46.32%
Whole genome
Non-coding
927 bp
D-loop 856 bp

Where Red tilefish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Red tilefish has the 1,408th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Red tilefish
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,541 bp
GC skew (G − C) / (G + C)
−0.294
AT skew (A − T) / (A + T)
+0.051

Life history

Maximum lifespan
12 years
Adult weight
687.5 g
Female sexual maturity
2.5 years
Male sexual maturity
2.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04240)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,541 bp
Protein-coding11,401 bp
12S rRNA949 bp
16S rRNA1,702 bp
All tRNA1,562 bp
D-loop856 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp26.6%26.3%15.1%32.1%47.18%−0.361+0.006
ND2NADH dehydrogenase subunit 21,046 bp25.8%24.3%12.6%37.3%49.90%−0.494+0.031
COX1Cytochrome c oxidase subunit I1,543 bp25.0%29.9%17.8%27.3%45.17%−0.211−0.090
COX2Cytochrome c oxidase subunit II691 bp27.8%26.6%15.8%29.8%45.59%−0.308+0.021
ATP8ATP synthase F0 subunit 8168 bp34.5%27.4%10.7%27.4%38.10%−0.438+0.115
ATP6ATP synthase F0 subunit 6684 bp25.6%27.6%14.9%31.9%46.78%−0.363−0.038
COX3Cytochrome c oxidase subunit III785 bp25.0%28.0%16.4%30.6%47.01%−0.301−0.058
ND3NADH dehydrogenase subunit 3349 bp20.9%28.9%12.9%37.2%50.14%−0.486−0.161
ND4LNADH dehydrogenase subunit 4L297 bp20.5%27.3%16.2%36.0%52.19%−0.381−0.141
ND4NADH dehydrogenase subunit 41,383 bp26.9%25.3%14.2%33.6%47.80%−0.407+0.030
ND5NADH dehydrogenase subunit 51,839 bp27.8%26.7%13.4%32.1%45.51%−0.410+0.020
ND6NADH dehydrogenase subunit 6522 bp38.5%15.1%12.8%33.5%46.36%−0.446+0.436
CYTBCytochrome b1,141 bp26.6%28.8%14.0%30.6%44.61%−0.371−0.041
12S rRNA12S ribosomal RNA949 bp30.2%21.0%22.7%26.1%48.79%−0.071+0.181
16S rRNA16S ribosomal RNA1,702 bp32.8%20.2%20.2%26.9%47.00%−0.143+0.239
D-loopControl region (D-loop)856 bp32.1%28.7%17.2%22.0%39.14%−0.122+0.056

Codon usage

Counts per codon, darker is more frequent

3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU102
UUC135
Leu L17.4%
UUA92
UUG25
CUU129
CUC172
CUA199
CUG44
Ile I6.5%
AUU127
AUC122
Met M4.3%
AUA110
AUG52
Val V5.9%
GUU68
GUC68
GUA72
GUG18
Ser S6.5%
UCU38
UCC94
UCA60
UCG4
AGU6
AGC45
Pro P5.8%
CCU51
CCC108
CCA54
CCG6
Thr T8.0%
ACU49
ACC122
ACA120
ACG12
Ala A9.0%
GCU58
GCC160
GCA111
GCG12
Tyr Y3.0%
UAU50
UAC66
His H2.8%
CAU22
CAC84
Gln Q2.5%
CAA82
CAG14
Asn N3.2%
AAU33
AAC90
Lys K2.0%
AAA66
AAG11
Asp D2.0%
GAU21
GAC54
Glu E2.5%
GAA70
GAG25
Cys C0.7%
UGU8
UGC18
Trp W3.1%
UGA102
UGG16
Arg R2.0%
CGU8
CGC19
CGA45
CGG4
Gly G6.4%
GGU35
GGC86
GGA84
GGG40
Stop 0.2%
UAA5
UAG2
AGA0
AGG0

Genome map

38 annotated features in NC_012904.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,017949 bp+48.8%
tRNA-ValTransfer RNA1,0181,09073 bp+–
16S rRNARibosomal RNA1,0912,7921,702 bp+47.0%
tRNA-Leu (UUR)Transfer RNA2,7932,86674 bp+–
ND1Protein-coding gene2,8673,841975 bp+47.2%
tRNA-IleTransfer RNA3,8463,91570 bp+–
tRNA-GlnTransfer RNA3,9153,98571 bp−–
tRNA-MetTransfer RNA3,9854,05470 bp+–
ND2Protein-coding gene4,0555,1001,046 bp+49.9%
tRNA-TrpTransfer RNA5,1015,17373 bp+–
tRNA-AlaTransfer RNA5,1745,24269 bp−–
tRNA-AsnTransfer RNA5,2445,31673 bp−–
tRNA-CysTransfer RNA5,3565,42166 bp−–
tRNA-TyrTransfer RNA5,4225,49170 bp−–
COX1Protein-coding gene5,4937,0351,543 bp+45.2%
tRNA-Ser (UCN)Transfer RNA7,0477,11771 bp−–
tRNA-AspTransfer RNA7,1217,19272 bp+–
COX2Protein-coding gene7,2017,891691 bp+45.6%
tRNA-LysTransfer RNA7,8927,96675 bp+–
ATP8Protein-coding gene7,9688,135168 bp+38.1%
ATP6Protein-coding gene8,1268,809684 bp+46.8%
COX3Protein-coding gene8,8099,593785 bp+47.0%
tRNA-GlyTransfer RNA9,5949,66471 bp+–
ND3Protein-coding gene9,66510,013349 bp+50.1%
tRNA-ArgTransfer RNA10,01410,08269 bp+–
ND4LProtein-coding gene10,08310,379297 bp+52.2%
ND4Protein-coding gene10,37311,7551,383 bp+47.8%
tRNA-HisTransfer RNA11,75611,82570 bp+–
tRNA-Ser (AGY)Transfer RNA11,82611,90176 bp+–
tRNA-Leu (CUN)Transfer RNA11,90211,97473 bp+–
ND5Protein-coding gene11,97513,8131,839 bp+45.5%
ND6Protein-coding gene13,81014,331522 bp−46.4%
tRNA-GluTransfer RNA14,33214,40069 bp−–
CYTBProtein-coding gene14,40415,5441,141 bp+44.6%
tRNA-ThrTransfer RNA15,54515,61672 bp+–
tRNA-ProTransfer RNA15,61615,68570 bp−–
D-loopControl region15,68616,541856 bp–39.1%

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