Callithrix geoffroyi

Geoffroy's marmoset

Maximum lifespan

17.6 yr

AnAge record

mtDNA size

16,502 bp

RefSeq NC_021941.1

GC content

40.47%

Whole genome

Non-coding

1,171 bp

Including the D-loop

Where Geoffroy's marmoset sits among 2,335 species

Whole-genome GC content against maximum lifespan. Geoffroy's marmoset has the 1,070th longest lifespan of them.

This species
Other mammals
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,502 bp

GC skew (G − C) / (G + C): −0.334
AT skew (A − T) / (A + T): +0.099

Life history

Maximum lifespan: 17.6 years
Adult weight: 342 g
Female sexual maturity: 477 days
Male sexual maturity: 382 days
Gestation or incubation: 144 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02682)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, large sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,502 bp

Protein-coding11,335 bp

12S rRNA949 bp

16S rRNA1,554 bp

All tRNA1,503 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Callithrix geoffroyi genes

ND1NADH dehydrogenase subunit 1	956 bp	31.6%	26.2%	11.0%	31.3%	42.26%	−0.480	+0.094
ND2NADH dehydrogenase subunit 2	1,039 bp	36.7%	24.2%	8.1%	31.1%	39.17%	−0.587	+0.206
COX1Cytochrome c oxidase subunit I	1,540 bp	27.9%	29.7%	16.6%	25.8%	42.47%	−0.217	−0.032
COX2Cytochrome c oxidase subunit II	688 bp	32.1%	27.0%	14.0%	26.9%	40.84%	−0.317	+0.086
ATP8ATP synthase F0 subunit 8	207 bp	39.1%	28.0%	7.2%	25.6%	32.85%	−0.559	+0.165
ATP6ATP synthase F0 subunit 6	681 bp	31.6%	28.8%	10.1%	29.5%	39.65%	−0.489	+0.046
COX3Cytochrome c oxidase subunit III	784 bp	28.7%	28.2%	14.9%	28.2%	43.11%	−0.308	+0.009
ND3NADH dehydrogenase subunit 3	346 bp	31.5%	28.3%	10.7%	29.5%	40.17%	−0.468	+0.053
ND4LNADH dehydrogenase subunit 4L	297 bp	31.6%	32.3%	11.1%	24.9%	36.03%	−0.383	−0.011
ND4NADH dehydrogenase subunit 4	1,375 bp	32.7%	28.4%	10.7%	28.2%	38.91%	−0.450	+0.069
ND5NADH dehydrogenase subunit 5	1,806 bp	32.5%	27.9%	11.5%	28.1%	39.59%	−0.421	+0.076
ND6NADH dehydrogenase subunit 6	534 bp	38.8%	21.2%	11.2%	28.8%	40.08%	−0.439	+0.294
CYTBCytochrome b	1,140 bp	28.5%	26.5%	13.9%	31.1%	45.00%	−0.384	+0.037
12S rRNA12S ribosomal RNA	949 bp	33.8%	22.6%	18.9%	24.8%	43.63%	−0.135	+0.200
16S rRNA16S ribosomal RNA	1,554 bp	36.0%	24.5%	16.8%	22.7%	39.51%	−0.150	+0.191

Codon usage

Counts per codon, darker is more frequent

Gene

3,795 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU105

UUC134

Leu L15.5%

UUA107

UUG16

CUU73

CUC77

CUA274

CUG43

Ile I8.7%

AUU162

AUC167

Met M6.5%

AUA195

AUG52

Val V4.0%

GUU28

GUC24

GUA75

GUG23

Ser S7.4%

UCU42

UCC74

UCA100

UCG11

AGU13

AGC40

Pro P5.4%

CCU44

CCC63

CCA91

CCG7

Thr T9.6%

ACU61

ACC122

ACA167

ACG14

Ala A6.7%

GCU49

GCC100

GCA101

GCG4

Tyr Y3.7%

UAU62

UAC77

His H2.6%

CAU33

CAC65

Gln Q2.5%

CAA87

CAG7

Asn N4.2%

AAU54

AAC105

Lys K2.4%

AAA79

AAG13

Asp D1.7%

GAU20

GAC46

Glu E2.3%

GAA69

GAG20

Cys C0.6%

UGU11

UGC13

Trp W2.7%

UGA88

UGG16

Arg R1.6%

CGU3

CGC13

CGA42

CGG4

Gly G5.4%

GGU33

GGC71

GGA65

GGG35

Stop 0.2%

UAA3

UAG3

AGA0

AGG0

Genome map

37 annotated features in NC_021941.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (40.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 37 features as a table

Annotated features of Callithrix geoffroyi (NC_021941.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,018	949 bp	+	43.6%
tRNA-Val	Transfer RNA	1,023	1,090	68 bp	+	–
16S rRNA	Ribosomal RNA	1,081	2,634	1,554 bp	+	39.5%
tRNA-Leu (UUR)	Transfer RNA	2,643	2,717	75 bp	+	–
ND1	Protein-coding gene	2,720	3,675	956 bp	+	42.3%
tRNA-Ile	Transfer RNA	3,676	3,744	69 bp	+	–
tRNA-Gln	Transfer RNA	3,742	3,813	72 bp	−	–
tRNA-Met	Transfer RNA	3,817	3,884	68 bp	+	–
ND2	Protein-coding gene	3,887	4,925	1,039 bp	+	39.2%
tRNA-Trp	Transfer RNA	4,926	4,992	67 bp	+	–
tRNA-Ala	Transfer RNA	5,001	5,069	69 bp	−	–
tRNA-Asn	Transfer RNA	5,071	5,143	73 bp	−	–
tRNA-Cys	Transfer RNA	5,176	5,242	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,242	5,308	67 bp	−	–
COX1	Protein-coding gene	5,316	6,855	1,540 bp	+	42.5%
tRNA-Ser (UCN)	Transfer RNA	6,860	6,928	69 bp	−	–
tRNA-Asp	Transfer RNA	6,932	7,000	69 bp	+	–
COX2	Protein-coding gene	7,001	7,688	688 bp	+	40.8%
tRNA-Lys	Transfer RNA	7,689	7,755	67 bp	+	–
ATP8	Protein-coding gene	7,756	7,962	207 bp	+	32.9%
ATP6	Protein-coding gene	7,917	8,597	681 bp	+	39.7%
COX3	Protein-coding gene	8,597	9,380	784 bp	+	43.1%
tRNA-Gly	Transfer RNA	9,381	9,447	67 bp	+	–
ND3	Protein-coding gene	9,448	9,793	346 bp	+	40.2%
tRNA-Arg	Transfer RNA	9,794	9,859	66 bp	+	–
ND4L	Protein-coding gene	9,863	10,159	297 bp	+	36.0%
ND4	Protein-coding gene	10,153	11,527	1,375 bp	+	38.9%
tRNA-His	Transfer RNA	11,528	11,596	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,597	11,655	59 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,656	11,726	71 bp	+	–
ND5	Protein-coding gene	11,730	13,535	1,806 bp	+	39.6%
ND6	Protein-coding gene	13,532	14,065	534 bp	−	40.1%
tRNA-Glu	Transfer RNA	14,066	14,134	69 bp	−	–
CYTB	Protein-coding gene	14,139	15,278	1,140 bp	+	45.0%
tRNA-Thr	Transfer RNA	15,281	15,348	68 bp	+	–
tRNA-Pro	Transfer RNA	15,350	15,418	69 bp	−	–