MitoAge

Callithrix penicillata

Black-pencilled marmoset

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Maximum lifespan
15.4 yr
AnAge record
mtDNA size
16,246 bp
RefSeq NC_030788.1
GC content
40.29%
Whole genome
Non-coding
898 bp
D-loop 825 bp

Where Black-pencilled marmoset sits among 2,335 species

Whole-genome GC content against maximum lifespan. Black-pencilled marmoset has the 1,196th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Black-pencilled marmoset
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,246 bp
GC skew (G − C) / (G + C)
−0.332
AT skew (A − T) / (A + T)
+0.096

Life history

Maximum lifespan
15.4 years
Adult weight
307 g
Female sexual maturity
477 days
Male sexual maturity
382 days
Gestation or incubation
144 days
Litter or clutch size
2

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02685)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,246 bp
Protein-coding11,352 bp
12S rRNA953 bp
16S rRNA1,553 bp
All tRNA1,504 bp
D-loop825 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.3%26.8%11.4%30.5%41.95%−0.456+0.077
ND2NADH dehydrogenase subunit 21,039 bp37.0%24.4%7.9%30.7%38.60%−0.591+0.204
COX1Cytochrome c oxidase subunit I1,557 bp28.4%29.6%16.4%25.6%42.00%−0.217−0.021
COX2Cytochrome c oxidase subunit II688 bp32.1%26.7%14.0%27.2%41.13%−0.322+0.091
ATP8ATP synthase F0 subunit 8207 bp39.1%27.1%7.2%26.6%33.82%−0.571+0.182
ATP6ATP synthase F0 subunit 6681 bp32.3%27.8%9.7%30.2%39.94%−0.515+0.076
COX3Cytochrome c oxidase subunit III784 bp29.0%28.1%14.7%28.3%42.99%−0.318+0.016
ND3NADH dehydrogenase subunit 3346 bp30.9%28.9%11.3%28.9%40.17%−0.439+0.034
ND4LNADH dehydrogenase subunit 4L297 bp31.3%32.0%11.1%25.6%36.70%−0.395−0.011
ND4NADH dehydrogenase subunit 41,375 bp32.8%28.2%10.5%28.5%38.98%−0.463+0.075
ND5NADH dehydrogenase subunit 51,806 bp32.8%28.0%11.1%28.1%39.15%−0.434+0.079
ND6NADH dehydrogenase subunit 6534 bp39.3%20.8%10.9%29.0%39.89%−0.455+0.308
CYTBCytochrome b1,140 bp28.4%27.0%13.9%30.7%44.56%−0.378+0.025
12S rRNA12S ribosomal RNA953 bp33.9%22.7%18.9%24.6%43.44%−0.130+0.199
16S rRNA16S ribosomal RNA1,553 bp35.9%24.6%16.7%22.7%39.47%−0.152+0.187
D-loopControl region (D-loop)825 bp30.9%28.1%17.0%24.0%40.97%−0.172+0.047

Codon usage

Counts per codon, darker is more frequent

3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU103
UUC133
Leu L15.6%
UUA112
UUG16
CUU80
CUC71
CUA279
CUG36
Ile I8.6%
AUU159
AUC168
Met M6.6%
AUA195
AUG55
Val V3.9%
GUU29
GUC26
GUA73
GUG22
Ser S7.4%
UCU42
UCC78
UCA98
UCG10
AGU15
AGC39
Pro P5.4%
CCU41
CCC64
CCA93
CCG7
Thr T9.6%
ACU60
ACC123
ACA168
ACG12
Ala A6.7%
GCU54
GCC96
GCA101
GCG3
Tyr Y3.7%
UAU61
UAC80
His H2.6%
CAU34
CAC63
Gln Q2.5%
CAA88
CAG6
Asn N4.2%
AAU55
AAC103
Lys K2.4%
AAA80
AAG12
Asp D1.7%
GAU19
GAC47
Glu E2.4%
GAA71
GAG20
Cys C0.6%
UGU10
UGC13
Trp W2.7%
UGA92
UGG12
Arg R1.6%
CGU3
CGC13
CGA42
CGG4
Gly G5.4%
GGU33
GGC71
GGA66
GGG35
Stop 0.2%
UAA4
UAG2
AGA0
AGG1

Genome map

38 annotated features in NC_030788.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,022953 bp+43.4%
tRNA-ValTransfer RNA1,0231,09068 bp+–
16S rRNARibosomal RNA1,0912,6431,553 bp+39.5%
tRNA-Leu (UUR)Transfer RNA2,6452,71975 bp+–
ND1Protein-coding gene2,7223,677956 bp+42.0%
tRNA-IleTransfer RNA3,6783,74669 bp+–
tRNA-GlnTransfer RNA3,7443,81572 bp−–
tRNA-MetTransfer RNA3,8193,88668 bp+–
ND2Protein-coding gene3,8894,9271,039 bp+38.6%
tRNA-TrpTransfer RNA4,9284,99467 bp+–
tRNA-AlaTransfer RNA5,0035,07169 bp−–
tRNA-AsnTransfer RNA5,0735,14573 bp−–
tRNA-CysTransfer RNA5,1805,24566 bp−–
tRNA-TyrTransfer RNA5,2455,31167 bp−–
COX1Protein-coding gene5,3196,8751,557 bp+42.0%
tRNA-Ser (UCN)Transfer RNA6,8626,93170 bp−–
tRNA-AspTransfer RNA6,9357,00369 bp+–
COX2Protein-coding gene7,0047,691688 bp+41.1%
tRNA-LysTransfer RNA7,6927,75867 bp+–
ATP8Protein-coding gene7,7597,965207 bp+33.8%
ATP6Protein-coding gene7,9208,600681 bp+39.9%
COX3Protein-coding gene8,6009,383784 bp+43.0%
tRNA-GlyTransfer RNA9,3849,45067 bp+–
ND3Protein-coding gene9,4519,796346 bp+40.2%
tRNA-ArgTransfer RNA9,7979,86266 bp+–
ND4LProtein-coding gene9,86610,162297 bp+36.7%
ND4Protein-coding gene10,15611,5301,375 bp+39.0%
tRNA-HisTransfer RNA11,53111,59969 bp+–
tRNA-Ser (AGY)Transfer RNA11,60011,65859 bp+–
tRNA-Leu (CUN)Transfer RNA11,65911,72971 bp+–
ND5Protein-coding gene11,73313,5381,806 bp+39.2%
ND6Protein-coding gene13,53514,068534 bp−39.9%
tRNA-GluTransfer RNA14,06914,13769 bp+–
CYTBProtein-coding gene14,14215,2811,140 bp+44.6%
tRNA-ThrTransfer RNA15,28415,35269 bp+–
tRNA-ProTransfer RNA15,35315,42169 bp−–
D-loopControl region15,42216,246825 bp–41.0%

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