MitoAge

Cebuella pygmaea

Pygmy marmoset

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Maximum lifespan
18.6 yr
AnAge record
mtDNA size
16,520 bp
RefSeq NC_021942.1
GC content
39.68%
Whole genome
Non-coding
1,185 bp
Including the D-loop

Where Pygmy marmoset sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pygmy marmoset has the 1,013th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Pygmy marmoset
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,520 bp
GC skew (G − C) / (G + C)
−0.335
AT skew (A − T) / (A + T)
+0.096

Life history

Maximum lifespan
18.6 years
Adult weight
124 g
Birth weight
16 g
Basal metabolic rate
0.599 W
Body temperature
35.2 °C
Female sexual maturity
684 days
Male sexual maturity
638 days
Gestation or incubation
125 days
Litter or clutch size
2

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02686)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Renamed in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)
Earlier name
Callithrix pygmaea

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,520 bp
Protein-coding11,352 bp
12S rRNA946 bp
16S rRNA1,557 bp
All tRNA1,503 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.8%27.9%11.2%29.1%40.27%−0.444+0.065
ND2NADH dehydrogenase subunit 21,039 bp36.8%25.4%8.3%29.5%37.83%−0.562+0.183
COX1Cytochrome c oxidase subunit I1,557 bp28.3%29.2%16.5%25.9%42.45%−0.222−0.016
COX2Cytochrome c oxidase subunit II688 bp31.5%28.1%14.4%26.0%40.41%−0.288+0.059
ATP8ATP synthase F0 subunit 8201 bp40.3%28.4%7.5%23.9%31.34%−0.524+0.174
ATP6ATP synthase F0 subunit 6681 bp32.3%28.6%9.7%29.4%39.06%−0.504+0.060
COX3Cytochrome c oxidase subunit III784 bp28.4%26.8%14.8%30.0%44.77%−0.339+0.030
ND3NADH dehydrogenase subunit 3346 bp31.2%28.3%11.0%29.5%40.46%−0.457+0.049
ND4LNADH dehydrogenase subunit 4L297 bp32.0%33.3%10.8%23.9%34.68%−0.379−0.021
ND4NADH dehydrogenase subunit 41,375 bp33.4%29.2%9.5%27.9%37.46%−0.491+0.067
ND5NADH dehydrogenase subunit 51,806 bp33.3%27.6%10.7%28.4%39.09%−0.453+0.095
ND6NADH dehydrogenase subunit 6534 bp40.1%21.3%10.7%27.9%38.58%−0.447+0.305
CYTBCytochrome b1,140 bp30.4%27.0%11.9%30.7%42.63%−0.440+0.058
12S rRNA12S ribosomal RNA946 bp33.8%23.5%19.3%23.4%42.71%−0.094+0.181
16S rRNA16S ribosomal RNA1,557 bp36.0%25.2%16.9%22.0%38.86%−0.131+0.176

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU94
UUC140
Leu L15.6%
UUA101
UUG18
CUU69
CUC75
CUA295
CUG34
Ile I9.1%
AUU177
AUC167
Met M6.6%
AUA199
AUG52
Val V3.8%
GUU30
GUC23
GUA75
GUG16
Ser S7.5%
UCU38
UCC80
UCA104
UCG9
AGU15
AGC39
Pro P5.5%
CCU45
CCC64
CCA94
CCG7
Thr T9.3%
ACU66
ACC105
ACA166
ACG15
Ala A6.5%
GCU53
GCC90
GCA101
GCG4
Tyr Y3.8%
UAU75
UAC68
His H2.5%
CAU32
CAC64
Gln Q2.4%
CAA86
CAG6
Asn N4.2%
AAU56
AAC103
Lys K2.4%
AAA85
AAG7
Asp D1.7%
GAU23
GAC43
Glu E2.4%
GAA81
GAG10
Cys C0.6%
UGU7
UGC16
Trp W2.7%
UGA88
UGG15
Arg R1.6%
CGU8
CGC13
CGA41
CGG0
Gly G5.4%
GGU41
GGC64
GGA71
GGG29
Stop 0.2%
UAA6
UAG0
AGA0
AGG1

Genome map

37 annotated features in NC_021942.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA731,018946 bp+42.7%
tRNA-ValTransfer RNA1,0221,08968 bp+–
16S rRNARibosomal RNA1,0802,6361,557 bp+38.9%
tRNA-Leu (UUR)Transfer RNA2,6452,71975 bp+–
ND1Protein-coding gene2,7223,677956 bp+40.3%
tRNA-IleTransfer RNA3,6783,74568 bp+–
tRNA-GlnTransfer RNA3,7433,81472 bp−–
tRNA-MetTransfer RNA3,8183,88568 bp+–
ND2Protein-coding gene3,8884,9261,039 bp+37.8%
tRNA-TrpTransfer RNA4,9274,99367 bp+–
tRNA-AlaTransfer RNA5,0025,07069 bp−–
tRNA-AsnTransfer RNA5,0725,14473 bp−–
tRNA-CysTransfer RNA5,1785,24467 bp−–
tRNA-TyrTransfer RNA5,2445,31067 bp−–
COX1Protein-coding gene5,3186,8741,557 bp+42.5%
tRNA-Ser (UCN)Transfer RNA6,8626,93069 bp−–
tRNA-AspTransfer RNA6,9347,00269 bp+–
COX2Protein-coding gene7,0047,691688 bp+40.4%
tRNA-LysTransfer RNA7,6927,75867 bp+–
ATP8Protein-coding gene7,7597,959201 bp+31.3%
ATP6Protein-coding gene7,9208,600681 bp+39.1%
COX3Protein-coding gene8,6009,383784 bp+44.8%
tRNA-GlyTransfer RNA9,3849,45067 bp+–
ND3Protein-coding gene9,4519,796346 bp+40.5%
tRNA-ArgTransfer RNA9,7979,86266 bp+–
ND4LProtein-coding gene9,86610,162297 bp+34.7%
ND4Protein-coding gene10,15611,5301,375 bp+37.5%
tRNA-HisTransfer RNA11,53111,59969 bp+–
tRNA-Ser (AGY)Transfer RNA11,60011,65859 bp+–
tRNA-Leu (CUN)Transfer RNA11,65911,72971 bp+–
ND5Protein-coding gene11,73313,5381,806 bp+39.1%
ND6Protein-coding gene13,53514,068534 bp−38.6%
tRNA-GluTransfer RNA14,06914,13769 bp−–
CYTBProtein-coding gene14,14215,2811,140 bp+42.6%
tRNA-ThrTransfer RNA15,28315,35169 bp+–
tRNA-ProTransfer RNA15,35315,42169 bp−–

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