MitoAge

Callosciurus erythraeus

Pallas's squirrel

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Maximum lifespan
17 yr
AnAge record
mtDNA size
16,550 bp
RefSeq NC_025550.1
GC content
39.29%
Whole genome
Non-coding
1,158 bp
D-loop 1,081 bp

Where Pallas's squirrel sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pallas's squirrel has the 1,100th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Pallas's squirrel
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,550 bp
GC skew (G − C) / (G + C)
−0.336
AT skew (A − T) / (A + T)
+0.033

Life history

Maximum lifespan
17 years
Adult weight
272 g
Gestation or incubation
48 days
Litter or clutch size
1.9
Litters per year
2

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03118)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,550 bp
Protein-coding11,332 bp
12S rRNA969 bp
16S rRNA1,578 bp
All tRNA1,513 bp
D-loop1,081 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp29.3%29.6%11.8%29.4%41.17%−0.426−0.005
ND2NADH dehydrogenase subunit 21,042 bp34.4%27.5%9.0%29.1%38.10%−0.526+0.110
COX1Cytochrome c oxidase subunit I1,542 bp27.4%32.0%16.5%24.0%40.53%−0.184−0.077
COX2Cytochrome c oxidase subunit II684 bp30.6%30.4%13.7%25.3%39.04%−0.296+0.002
ATP8ATP synthase F0 subunit 8204 bp34.3%28.9%6.4%30.4%36.77%−0.653+0.085
ATP6ATP synthase F0 subunit 6681 bp31.3%28.3%9.7%30.7%40.38%−0.520+0.049
COX3Cytochrome c oxidase subunit III784 bp25.4%31.5%15.4%27.7%43.11%−0.284−0.108
ND3NADH dehydrogenase subunit 3348 bp28.7%33.3%12.1%25.9%37.93%−0.364−0.074
ND4LNADH dehydrogenase subunit 4L297 bp29.3%33.7%11.8%25.3%37.04%−0.364−0.070
ND4NADH dehydrogenase subunit 41,378 bp31.1%31.2%10.4%27.3%37.66%−0.449−0.001
ND5NADH dehydrogenase subunit 51,818 bp29.9%31.2%10.9%27.9%38.89%−0.437−0.021
ND6NADH dehydrogenase subunit 6525 bp41.0%21.0%7.2%30.9%38.10%−0.620+0.323
CYTBCytochrome b1,140 bp26.7%29.0%12.8%31.5%44.30%−0.422−0.043
12S rRNA12S ribosomal RNA969 bp34.6%24.4%18.1%23.0%41.07%−0.121+0.173
16S rRNA16S ribosomal RNA1,578 bp36.4%25.4%16.8%21.4%38.15%−0.120+0.178
D-loopControl region (D-loop)1,081 bp30.5%32.6%11.6%25.3%36.91%−0.373−0.032

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU121
UUC118
Leu L16.3%
UUA112
UUG25
CUU105
CUC118
CUA222
CUG38
Ile I9.2%
AUU184
AUC167
Met M6.4%
AUA205
AUG38
Val V4.4%
GUU35
GUC49
GUA69
GUG14
Ser S8.1%
UCU78
UCC69
UCA98
UCG12
AGU14
AGC36
Pro P5.2%
CCU72
CCC79
CCA44
CCG4
Thr T7.4%
ACU70
ACC91
ACA114
ACG8
Ala A6.3%
GCU54
GCC100
GCA76
GCG9
Tyr Y3.5%
UAU74
UAC59
His H2.4%
CAU35
CAC58
Gln Q2.2%
CAA73
CAG9
Asn N4.2%
AAU63
AAC97
Lys K2.4%
AAA84
AAG9
Asp D1.9%
GAU36
GAC38
Glu E2.6%
GAA73
GAG25
Cys C0.6%
UGU10
UGC14
Trp W2.7%
UGA93
UGG11
Arg R1.7%
CGU14
CGC12
CGA37
CGG2
Gly G5.7%
GGU40
GGC56
GGA95
GGG24
Stop 0.3%
UAA6
UAG2
AGA2
AGG0

Genome map

38 annotated features in NC_025550.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,037969 bp+41.1%
tRNA-ValTransfer RNA1,0381,10568 bp+–
16S rRNARibosomal RNA1,1062,6831,578 bp+38.2%
tRNA-Leu (UUR)Transfer RNA2,6842,75875 bp+–
ND1Protein-coding gene2,7633,719957 bp+41.2%
tRNA-IleTransfer RNA3,7203,78869 bp+–
tRNA-GlnTransfer RNA3,7863,85772 bp−–
tRNA-MetTransfer RNA3,8603,92970 bp+–
ND2Protein-coding gene3,9304,9711,042 bp+38.1%
tRNA-TrpTransfer RNA4,9725,03867 bp+–
tRNA-AlaTransfer RNA5,0425,11069 bp−–
tRNA-AsnTransfer RNA5,1165,18873 bp−–
tRNA-CysTransfer RNA5,2205,28768 bp−–
tRNA-TyrTransfer RNA5,2895,35466 bp−–
COX1Protein-coding gene5,3636,9041,542 bp+40.5%
tRNA-Ser (UCN)Transfer RNA6,9086,97669 bp−–
tRNA-AspTransfer RNA6,9807,04869 bp+–
COX2Protein-coding gene7,0507,733684 bp+39.0%
tRNA-LysTransfer RNA7,7377,80468 bp+–
ATP8Protein-coding gene7,8068,009204 bp+36.8%
ATP6Protein-coding gene7,9678,647681 bp+40.4%
COX3Protein-coding gene8,6479,430784 bp+43.1%
tRNA-GlyTransfer RNA9,4319,50272 bp+–
ND3Protein-coding gene9,5039,850348 bp+37.9%
tRNA-ArgTransfer RNA9,8519,91767 bp+–
ND4LProtein-coding gene9,91910,215297 bp+37.0%
ND4Protein-coding gene10,20911,5861,378 bp+37.7%
tRNA-HisTransfer RNA11,58711,65872 bp+–
tRNA-Ser (UCN)Transfer RNA11,66011,71758 bp+–
tRNA-Leu (CUN)Transfer RNA11,71911,78870 bp+–
ND5Protein-coding gene11,78913,6061,818 bp+38.9%
ND6Protein-coding gene13,59014,114525 bp−38.1%
tRNA-GluTransfer RNA14,11514,18369 bp−–
CYTBProtein-coding gene14,18815,3271,140 bp+44.3%
tRNA-ThrTransfer RNA15,32915,39668 bp+–
tRNA-ProTransfer RNA15,40115,46969 bp−–
D-loopControl region15,47016,5501,081 bp–36.9%

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