Callosciurus finlaysonii
Finlayson's squirrel
GC content
39.41%
Whole genome
Non-coding
1,104 bp
D-loop 68 bp
Where Finlayson's squirrel sits among 2,335 species
Whole-genome GC content against maximum lifespan. Finlayson's squirrel has the 1,378th longest lifespan of them.
- This species
- Other mammals
- Other classes
Base composition
Whole genome16,490 bp
- GC skew (G − C) / (G + C)
- −0.338
- AT skew (A − T) / (A + T)
- +0.036
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, tiny sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,490 bp
Protein-coding11,332 bp
12S rRNA967 bp
16S rRNA1,578 bp
All tRNA1,509 bp
D-loop68 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 957 bp | 41.07% | −0.435 | +0.004 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,042 bp | 38.29% | −0.554 | +0.135 | |||||
| COX1Cytochrome c oxidase subunit I | 1,542 bp | 41.76% | −0.180 | −0.076 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 39.18% | −0.321 | +0.014 | |||||
| ATP8ATP synthase F0 subunit 8 | 204 bp | 36.77% | −0.680 | +0.101 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 38.77% | −0.470 | +0.002 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 42.47% | −0.285 | −0.086 | |||||
| ND3NADH dehydrogenase subunit 3 | 348 bp | 37.93% | −0.394 | −0.065 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 36.70% | −0.358 | −0.074 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 38.97% | −0.434 | +0.008 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 38.78% | −0.458 | −0.010 | |||||
| ND6NADH dehydrogenase subunit 6 | 525 bp | 36.76% | −0.596 | +0.283 | |||||
| CYTBCytochrome b | 1,140 bp | 43.60% | −0.396 | −0.070 | |||||
| 12S rRNA12S ribosomal RNA | 967 bp | 40.54% | −0.133 | +0.183 | |||||
| 16S rRNA16S ribosomal RNA | 1,578 bp | 38.02% | −0.137 | +0.194 | |||||
| D-loopControl region (D-loop) | 68 bp | 29.41% | −0.100 | −0.083 |
Codon usage
Counts per codon, darker is more frequent3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU109
UUC130
Leu L16.2%
UUA113
UUG23
CUU113
CUC106
CUA228
CUG32
Ile I9.2%
AUU188
AUC163
Met M6.4%
AUA205
AUG39
Val V4.5%
GUU38
GUC50
GUA73
GUG10
Ser S8.1%
UCU77
UCC68
UCA103
UCG8
AGU17
AGC33
Pro P5.3%
CCU70
CCC81
CCA48
CCG1
Thr T7.3%
ACU70
ACC84
ACA118
ACG7
Ala A6.4%
GCU57
GCC101
GCA77
GCG9
Tyr Y3.5%
UAU71
UAC63
His H2.5%
CAU39
CAC55
Gln Q2.2%
CAA72
CAG10
Asn N4.1%
AAU53
AAC103
Lys K2.5%
AAA81
AAG13
Asp D2.0%
GAU39
GAC36
Glu E2.5%
GAA75
GAG21
Cys C0.6%
UGU6
UGC18
Trp W2.7%
UGA95
UGG8
Arg R1.7%
CGU13
CGC12
CGA36
CGG4
Gly G5.7%
GGU27
GGC69
GGA92
GGG29
Stop 0.3%
UAA8
UAG0
AGA2
AGG0
Genome map
38 annotated features in NC_035817.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (39.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 51 | 118 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 119 | 1,085 | 967 bp | + | 40.5% |
| tRNA-Val | Transfer RNA | 1,086 | 1,153 | 68 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,154 | 2,731 | 1,578 bp | + | 38.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,732 | 2,805 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,811 | 3,767 | 957 bp | + | 41.1% |
| tRNA-Ile | Transfer RNA | 3,768 | 3,836 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,834 | 3,905 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,908 | 3,977 | 70 bp | + | – |
| ND2 | Protein-coding gene | 3,978 | 5,019 | 1,042 bp | + | 38.3% |
| tRNA-Trp | Transfer RNA | 5,020 | 5,086 | 67 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,090 | 5,158 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,164 | 5,236 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,268 | 5,334 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,336 | 5,401 | 66 bp | − | – |
| COX1 | Protein-coding gene | 5,410 | 6,951 | 1,542 bp | + | 41.8% |
| tRNA-Ser (UCN) | Transfer RNA | 6,955 | 7,023 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,027 | 7,095 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,097 | 7,780 | 684 bp | + | 39.2% |
| tRNA-Lys | Transfer RNA | 7,784 | 7,851 | 68 bp | + | – |
| ATP8 | Protein-coding gene | 7,853 | 8,056 | 204 bp | + | 36.8% |
| ATP6 | Protein-coding gene | 8,014 | 8,694 | 681 bp | + | 38.8% |
| COX3 | Protein-coding gene | 8,694 | 9,477 | 784 bp | + | 42.5% |
| tRNA-Gly | Transfer RNA | 9,478 | 9,549 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,550 | 9,897 | 348 bp | + | 37.9% |
| tRNA-Arg | Transfer RNA | 9,898 | 9,964 | 67 bp | + | – |
| ND4L | Protein-coding gene | 9,966 | 10,262 | 297 bp | + | 36.7% |
| ND4 | Protein-coding gene | 10,256 | 11,633 | 1,378 bp | + | 39.0% |
| tRNA-His | Transfer RNA | 11,634 | 11,704 | 71 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,706 | 11,762 | 57 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,764 | 11,833 | 70 bp | + | – |
| ND5 | Protein-coding gene | 11,834 | 13,651 | 1,818 bp | + | 38.8% |
| ND6 | Protein-coding gene | 13,635 | 14,159 | 525 bp | − | 36.8% |
| tRNA-Glu | Transfer RNA | 14,160 | 14,228 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,233 | 15,372 | 1,140 bp | + | 43.6% |
| tRNA-Thr | Transfer RNA | 15,374 | 15,441 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,446 | 15,514 | 69 bp | − | – |
| D-loop | Control region | 15,518 | 15,585 | 68 bp | – | 29.4% |