Callosciurus notatus

Plantain squirrel

Maximum lifespan

14.8 yr

AnAge record

mtDNA size

16,599 bp

RefSeq NC_035815.1

GC content

38.61%

Whole genome

Non-coding

1,197 bp

D-loop 71 bp

Where Plantain squirrel sits among 2,335 species

Whole-genome GC content against maximum lifespan. Plantain squirrel has the 1,262nd longest lifespan of them.

This species
Other mammals
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,599 bp

GC skew (G − C) / (G + C): −0.332
AT skew (A − T) / (A + T): +0.035

Life history

Maximum lifespan: 14.8 years
Adult weight: 190 g
Female sexual maturity: 414 days
Gestation or incubation: 48 days
Litter or clutch size: 3.1

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03120)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, tiny sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,599 bp

Protein-coding11,332 bp

12S rRNA966 bp

16S rRNA1,591 bp

All tRNA1,513 bp

D-loop71 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Callosciurus notatus genes

ND1NADH dehydrogenase subunit 1	957 bp	29.3%	28.8%	11.8%	30.1%	41.90%	−0.436	+0.007
ND2NADH dehydrogenase subunit 2	1,042 bp	34.1%	28.5%	9.5%	27.9%	37.43%	−0.492	+0.089
COX1Cytochrome c oxidase subunit I	1,542 bp	27.5%	32.7%	16.7%	23.1%	39.82%	−0.160	−0.086
COX2Cytochrome c oxidase subunit II	684 bp	30.8%	29.1%	13.6%	26.5%	40.06%	−0.321	+0.029
ATP8ATP synthase F0 subunit 8	204 bp	32.8%	30.9%	6.4%	29.9%	36.28%	−0.649	+0.031
ATP6ATP synthase F0 subunit 6	681 bp	30.0%	31.7%	10.7%	27.6%	38.33%	−0.441	−0.029
COX3Cytochrome c oxidase subunit III	784 bp	26.5%	32.4%	15.2%	25.9%	41.07%	−0.261	−0.100
ND3NADH dehydrogenase subunit 3	348 bp	28.4%	31.6%	11.8%	28.2%	39.94%	−0.410	−0.053
ND4LNADH dehydrogenase subunit 4L	297 bp	30.3%	36.7%	10.4%	22.6%	33.00%	−0.367	−0.095
ND4NADH dehydrogenase subunit 4	1,378 bp	31.6%	30.5%	10.4%	27.5%	37.88%	−0.452	+0.019
ND5NADH dehydrogenase subunit 5	1,818 bp	31.2%	29.9%	10.3%	28.5%	38.89%	−0.468	+0.023
ND6NADH dehydrogenase subunit 6	525 bp	40.8%	24.0%	7.0%	28.2%	35.24%	−0.600	+0.259
CYTBCytochrome b	1,140 bp	27.8%	31.5%	12.6%	28.1%	40.70%	−0.379	−0.062
12S rRNA12S ribosomal RNA	966 bp	34.4%	24.1%	18.1%	23.4%	41.51%	−0.127	+0.175
16S rRNA16S ribosomal RNA	1,591 bp	36.8%	25.9%	16.3%	21.0%	37.34%	−0.125	+0.174
D-loopControl region (D-loop)	71 bp	32.4%	39.4%	9.9%	18.3%	28.17%	−0.300	−0.098

Codon usage

Counts per codon, darker is more frequent

Gene

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%

UUU123

UUC120

Leu L16.4%

UUA133

UUG16

CUU107

CUC115

CUA224

CUG28

Ile I9.2%

AUU203

AUC146

Met M6.2%

AUA207

AUG30

Val V4.6%

GUU41

GUC47

GUA69

GUG16

Ser S7.7%

UCU63

UCC66

UCA110

UCG5

AGU18

AGC31

Pro P5.3%

CCU73

CCC62

CCA61

CCG6

Thr T7.4%

ACU66

ACC89

ACA118

ACG10

Ala A6.6%

GCU75

GCC89

GCA79

GCG6

Tyr Y3.4%

UAU74

UAC56

His H2.5%

CAU35

CAC59

Gln Q2.1%

CAA75

CAG6

Asn N4.1%

AAU62

AAC95

Lys K2.4%

AAA85

AAG8

Asp D2.0%

GAU35

GAC41

Glu E2.6%

GAA76

GAG22

Cys C0.6%

UGU9

UGC15

Trp W2.7%

UGA95

UGG8

Arg R1.7%

CGU13

CGC8

CGA41

CGG3

Gly G5.7%

GGU38

GGC55

GGA95

GGG28

Stop 0.3%

UAA8

UAG0

AGA2

AGG0

Genome map

38 annotated features in NC_035815.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (38.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Callosciurus notatus (NC_035815.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	149	218	70 bp	+	–
12S rRNA	Ribosomal RNA	219	1,184	966 bp	+	41.5%
tRNA-Val	Transfer RNA	1,185	1,252	68 bp	+	–
16S rRNA	Ribosomal RNA	1,253	2,843	1,591 bp	+	37.3%
tRNA-Leu (UUR)	Transfer RNA	2,844	2,917	74 bp	+	–
ND1	Protein-coding gene	2,922	3,878	957 bp	+	41.9%
tRNA-Ile	Transfer RNA	3,879	3,947	69 bp	+	–
tRNA-Gln	Transfer RNA	3,945	4,016	72 bp	−	–
tRNA-Met	Transfer RNA	4,019	4,088	70 bp	+	–
ND2	Protein-coding gene	4,089	5,130	1,042 bp	+	37.4%
tRNA-Trp	Transfer RNA	5,131	5,197	67 bp	+	–
tRNA-Ala	Transfer RNA	5,201	5,269	69 bp	−	–
tRNA-Asn	Transfer RNA	5,277	5,349	73 bp	−	–
tRNA-Cys	Transfer RNA	5,381	5,446	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,448	5,513	66 bp	−	–
COX1	Protein-coding gene	5,522	7,063	1,542 bp	+	39.8%
tRNA-Ser (UCN)	Transfer RNA	7,067	7,135	69 bp	−	–
tRNA-Asp	Transfer RNA	7,139	7,207	69 bp	+	–
COX2	Protein-coding gene	7,209	7,892	684 bp	+	40.1%
tRNA-Lys	Transfer RNA	7,896	7,963	68 bp	+	–
ATP8	Protein-coding gene	7,965	8,168	204 bp	+	36.3%
ATP6	Protein-coding gene	8,126	8,806	681 bp	+	38.3%
COX3	Protein-coding gene	8,806	9,589	784 bp	+	41.1%
tRNA-Gly	Transfer RNA	9,590	9,661	72 bp	+	–
ND3	Protein-coding gene	9,662	10,009	348 bp	+	39.9%
tRNA-Arg	Transfer RNA	10,010	10,076	67 bp	+	–
ND4L	Protein-coding gene	10,078	10,374	297 bp	+	33.0%
ND4	Protein-coding gene	10,368	11,745	1,378 bp	+	37.9%
tRNA-His	Transfer RNA	11,746	11,817	72 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,819	11,876	58 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,878	11,947	70 bp	+	–
ND5	Protein-coding gene	11,948	13,765	1,818 bp	+	38.9%
ND6	Protein-coding gene	13,749	14,273	525 bp	−	35.2%
tRNA-Glu	Transfer RNA	14,274	14,342	69 bp	−	–
CYTB	Protein-coding gene	14,347	15,486	1,140 bp	+	40.7%
tRNA-Thr	Transfer RNA	15,488	15,556	69 bp	+	–
tRNA-Pro	Transfer RNA	15,561	15,629	69 bp	−	–
D-loop	Control region	15,633	15,703	71 bp	–	28.2%