MitoAge

Callospermophilus lateralis

Golden-mantled ground squirrel

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Maximum lifespan
10.4 yr
AnAge record
mtDNA size
16,457 bp
RefSeq NC_031210.1
GC content
36.81%
Whole genome
Non-coding
1,084 bp
D-loop 1,009 bp

Where Golden-mantled ground squirrel sits among 2,335 species

Whole-genome GC content against maximum lifespan. Golden-mantled ground squirrel has the 1,538th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Golden-mantled ground squirrel
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,457 bp
GC skew (G − C) / (G + C)
−0.317
AT skew (A − T) / (A + T)
+0.022

Life history

Maximum lifespan
10.4 years
Adult weight
157.6 g
Birth weight
6.3 g
Basal metabolic rate
0.967 W
Body temperature
36.3 °C
Female sexual maturity
637 days
Gestation or incubation
30 days
Litter or clutch size
5.1
Litters per year
0.9
Postnatal growth rate
0.0411 per day

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03122)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,457 bp
Protein-coding11,329 bp
12S rRNA970 bp
16S rRNA1,566 bp
All tRNA1,508 bp
D-loop1,009 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp30.0%29.7%11.9%28.3%40.27%−0.408+0.005
ND2NADH dehydrogenase subunit 21,042 bp35.2%30.2%8.3%26.3%34.55%−0.522+0.076
COX1Cytochrome c oxidase subunit I1,542 bp28.1%33.3%16.0%22.7%38.65%−0.175−0.085
COX2Cytochrome c oxidase subunit II684 bp33.3%31.0%12.7%23.0%35.67%−0.287+0.036
ATP8ATP synthase F0 subunit 8207 bp35.7%32.9%6.3%25.1%31.40%−0.600+0.042
ATP6ATP synthase F0 subunit 6681 bp29.2%33.5%11.2%26.1%37.30%−0.402−0.068
COX3Cytochrome c oxidase subunit III784 bp26.9%32.5%15.2%25.4%40.56%−0.252−0.094
ND3NADH dehydrogenase subunit 3346 bp28.9%35.5%11.6%24.0%35.55%−0.350−0.103
ND4LNADH dehydrogenase subunit 4L297 bp29.3%39.7%10.1%20.9%30.98%−0.348−0.151
ND4NADH dehydrogenase subunit 41,378 bp31.6%33.7%10.0%24.7%34.76%−0.424−0.032
ND5NADH dehydrogenase subunit 51,818 bp31.0%31.6%10.6%26.8%37.40%−0.435−0.011
ND6NADH dehydrogenase subunit 6525 bp40.6%23.0%6.7%29.7%36.38%−0.634+0.275
CYTBCytochrome b1,140 bp29.1%31.7%12.5%26.7%39.21%−0.360−0.042
12S rRNA12S ribosomal RNA970 bp36.0%25.9%16.9%21.2%38.14%−0.114+0.163
16S rRNA16S ribosomal RNA1,566 bp37.4%27.1%16.0%19.5%35.44%−0.099+0.159
D-loopControl region (D-loop)1,009 bp30.9%31.9%11.4%25.8%37.17%−0.387−0.016

Codon usage

Counts per codon, darker is more frequent

3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.8%
UUU145
UUC112
Leu L16.1%
UUA164
UUG19
CUU132
CUC77
CUA197
CUG22
Ile I9.0%
AUU200
AUC141
Met M6.1%
AUA197
AUG33
Val V4.6%
GUU50
GUC26
GUA85
GUG15
Ser S8.0%
UCU67
UCC59
UCA123
UCG9
AGU19
AGC25
Pro P5.1%
CCU59
CCC68
CCA60
CCG6
Thr T8.0%
ACU80
ACC83
ACA129
ACG10
Ala A6.1%
GCU77
GCC67
GCA84
GCG4
Tyr Y3.5%
UAU82
UAC51
His H2.6%
CAU47
CAC52
Gln Q2.1%
CAA76
CAG5
Asn N4.2%
AAU82
AAC76
Lys K2.4%
AAA75
AAG18
Asp D1.8%
GAU33
GAC37
Glu E2.6%
GAA81
GAG18
Cys C0.7%
UGU14
UGC14
Trp W2.7%
UGA100
UGG4
Arg R1.7%
CGU11
CGC10
CGA44
CGG0
Gly G5.7%
GGU42
GGC45
GGA105
GGG24
Stop 0.2%
UAA5
UAG1
AGA2
AGG0

Genome map

38 annotated features in NC_031210.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (36.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,038970 bp+38.1%
tRNA-ValTransfer RNA1,0391,10971 bp+–
16S rRNARibosomal RNA1,1102,6751,566 bp+35.4%
tRNA-Leu (UUR)Transfer RNA2,6762,74974 bp+–
ND1Protein-coding gene2,7533,708956 bp+40.3%
tRNA-IleTransfer RNA3,7093,77769 bp+–
tRNA-GlnTransfer RNA3,7753,84672 bp−–
tRNA-MetTransfer RNA3,8503,91869 bp+–
ND2Protein-coding gene3,9194,9601,042 bp+34.6%
tRNA-TrpTransfer RNA4,9615,02868 bp+–
tRNA-AlaTransfer RNA5,0325,10069 bp−–
tRNA-AsnTransfer RNA5,1065,17873 bp−–
tRNA-CysTransfer RNA5,2095,27668 bp−–
tRNA-TyrTransfer RNA5,2775,34266 bp−–
COX1Protein-coding gene5,3516,8921,542 bp+38.7%
tRNA-Ser (UCN)Transfer RNA6,8956,96470 bp−–
tRNA-AspTransfer RNA6,9677,03569 bp+–
COX2Protein-coding gene7,0367,719684 bp+35.7%
tRNA-LysTransfer RNA7,7237,79068 bp+–
ATP8Protein-coding gene7,7927,998207 bp+31.4%
ATP6Protein-coding gene7,9538,633681 bp+37.3%
COX3Protein-coding gene8,6339,416784 bp+40.6%
tRNA-GlyTransfer RNA9,4179,48670 bp+–
ND3Protein-coding gene9,4879,832346 bp+35.6%
tRNA-ArgTransfer RNA9,8349,89966 bp+–
ND4LProtein-coding gene9,90110,197297 bp+31.0%
ND4Protein-coding gene10,19111,5681,378 bp+34.8%
tRNA-HisTransfer RNA11,56911,63769 bp+–
tRNA-Ser (AGY)Transfer RNA11,63911,69557 bp+–
tRNA-Leu (CUN)Transfer RNA11,69711,76670 bp+–
ND5Protein-coding gene11,76713,5841,818 bp+37.4%
ND6Protein-coding gene13,56814,092525 bp−36.4%
tRNA-GluTransfer RNA14,09314,16169 bp−–
CYTBProtein-coding gene14,16615,3051,140 bp+39.2%
tRNA-ThrTransfer RNA15,30615,37267 bp+–
tRNA-ProTransfer RNA15,38015,44869 bp−–
D-loopControl region15,44916,4571,009 bp–37.2%

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