Calotomus japonicus
Japanese parrotfish
GC content
43.92%
Whole genome
Non-coding
1,585 bp
D-loop 1,313 bp
Where Japanese parrotfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Japanese parrotfish has the 1,761st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,199 bp
- GC skew (G − C) / (G + C)
- −0.233
- AT skew (A − T) / (A + T)
- −0.020
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,199 bp
Protein-coding11,412 bp
12S rRNA953 bp
16S rRNA1,691 bp
All tRNA1,558 bp
D-loop1,313 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.44% | −0.282 | −0.105 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 45.74% | −0.364 | −0.055 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.59% | −0.180 | −0.106 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.84% | −0.250 | +0.018 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 43.45% | −0.397 | +0.095 | |||||
| ATP6ATP synthase F0 subunit 6 | 689 bp | 44.27% | −0.351 | −0.120 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.06% | −0.207 | −0.065 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 44.03% | −0.316 | −0.086 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.12% | −0.328 | −0.215 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.16% | −0.322 | −0.088 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,842 bp | 43.05% | −0.274 | −0.098 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.64% | −0.348 | +0.308 | |||||
| CYTBCytochrome b | 1,141 bp | 44.26% | −0.240 | −0.138 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 49.95% | −0.071 | +0.178 | |||||
| 16S rRNA16S ribosomal RNA | 1,691 bp | 45.06% | −0.092 | +0.195 | |||||
| D-loopControl region (D-loop) | 1,313 bp | 40.67% | −0.262 | −0.132 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU118
UUC122
Leu L16.8%
UUA112
UUG34
CUU184
CUC117
CUA138
CUG55
Ile I7.5%
AUU181
AUC104
Met M4.0%
AUA94
AUG57
Val V6.3%
GUU88
GUC58
GUA70
GUG25
Ser S6.7%
UCU46
UCC59
UCA89
UCG18
AGU14
AGC28
Pro P5.7%
CCU73
CCC70
CCA64
CCG9
Thr T6.9%
ACU59
ACC84
ACA100
ACG21
Ala A9.1%
GCU85
GCC123
GCA125
GCG14
Tyr Y3.3%
UAU52
UAC73
His H2.7%
CAU40
CAC62
Gln Q2.6%
CAA82
CAG16
Asn N2.8%
AAU35
AAC71
Lys K2.2%
AAA62
AAG22
Asp D2.2%
GAU28
GAC54
Glu E2.5%
GAA80
GAG15
Cys C0.9%
UGU15
UGC19
Trp W3.0%
UGA91
UGG25
Arg R2.0%
CGU15
CGC6
CGA49
CGG6
Gly G6.5%
GGU51
GGC59
GGA95
GGG43
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_035427.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,021 | 953 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,022 | 1,094 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,785 | 1,691 bp | + | 45.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,786 | 2,858 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 45.4% |
| tRNA-Ile | Transfer RNA | 3,841 | 3,910 | 70 bp | + | – |
| tRNA-Met | Transfer RNA | 3,921 | 3,990 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,997 | 4,067 | 71 bp | − | – |
| ND2 | Protein-coding gene | 4,137 | 5,181 | 1,045 bp | + | 45.7% |
| tRNA-Trp | Transfer RNA | 5,182 | 5,250 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,255 | 5,325 | 71 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,332 | 5,404 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,443 | 5,508 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,518 | 5,588 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,590 | 7,140 | 1,551 bp | + | 43.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,141 | 7,211 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,215 | 7,286 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,291 | 7,981 | 691 bp | + | 42.8% |
| tRNA-Lys | Transfer RNA | 7,982 | 8,055 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,057 | 8,224 | 168 bp | + | 43.5% |
| ATP6 | Protein-coding gene | 8,209 | 8,897 | 689 bp | + | 44.3% |
| COX3 | Protein-coding gene | 8,898 | 9,682 | 785 bp | + | 43.1% |
| tRNA-Gly | Transfer RNA | 9,683 | 9,753 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,755 | 10,106 | 352 bp | + | 44.0% |
| tRNA-Arg | Transfer RNA | 10,107 | 10,176 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,177 | 10,473 | 297 bp | + | 45.1% |
| ND4 | Protein-coding gene | 10,467 | 11,847 | 1,381 bp | + | 43.2% |
| tRNA-His | Transfer RNA | 11,848 | 11,916 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,918 | 11,984 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,023 | 12,094 | 72 bp | + | – |
| ND5 | Protein-coding gene | 12,099 | 13,940 | 1,842 bp | + | 43.1% |
| ND6 | Protein-coding gene | 13,937 | 14,458 | 522 bp | − | 44.6% |
| tRNA-Glu | Transfer RNA | 14,460 | 14,532 | 73 bp | − | – |
| CYTB | Protein-coding gene | 14,602 | 15,742 | 1,141 bp | + | 44.3% |
| tRNA-Thr | Transfer RNA | 15,743 | 15,814 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,815 | 15,886 | 72 bp | − | – |
| D-loop | Control region | 15,887 | 17,199 | 1,313 bp | – | 40.7% |