Campostoma oligolepis
Largescale stoneroller
GC content
44.26%
Whole genome
Non-coding
1,038 bp
D-loop 978 bp
Where Largescale stoneroller sits among 2,335 species
Whole-genome GC content against maximum lifespan. Largescale stoneroller has the 2,043rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,650 bp
- GC skew (G − C) / (G + C)
- −0.191
- AT skew (A − T) / (A + T)
- +0.012
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,650 bp
Protein-coding11,403 bp
12S rRNA958 bp
16S rRNA1,689 bp
All tRNA1,562 bp
D-loop978 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.00% | −0.235 | −0.160 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.33% | −0.339 | −0.067 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.30% | −0.125 | −0.113 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.96% | −0.180 | +0.020 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 38.79% | −0.438 | +0.149 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.94% | −0.279 | −0.064 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.90% | −0.182 | −0.088 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.27% | −0.179 | −0.131 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.11% | −0.344 | −0.048 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.55% | −0.272 | −0.030 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 44.34% | −0.243 | −0.012 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.28% | −0.294 | +0.326 | |||||
| CYTBCytochrome b | 1,141 bp | 43.91% | −0.269 | −0.044 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 49.69% | −0.055 | +0.220 | |||||
| 16S rRNA16S ribosomal RNA | 1,689 bp | 44.82% | −0.041 | +0.232 | |||||
| D-loopControl region (D-loop) | 978 bp | 37.53% | −0.193 | +0.018 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU109
UUC122
Leu L16.3%
UUA124
UUG40
CUU142
CUC103
CUA159
CUG53
Ile I7.0%
AUU183
AUC83
Met M4.7%
AUA115
AUG63
Val V6.8%
GUU73
GUC46
GUA112
GUG27
Ser S6.6%
UCU45
UCC66
UCA65
UCG15
AGU12
AGC47
Pro P5.6%
CCU57
CCC54
CCA88
CCG14
Thr T7.4%
ACU60
ACC92
ACA112
ACG19
Ala A9.1%
GCU77
GCC137
GCA102
GCG29
Tyr Y3.0%
UAU56
UAC58
His H2.8%
CAU40
CAC66
Gln Q2.5%
CAA71
CAG25
Asn N2.8%
AAU42
AAC66
Lys K2.1%
AAA57
AAG22
Asp D2.1%
GAU29
GAC51
Glu E2.7%
GAA75
GAG27
Cys C0.7%
UGU10
UGC17
Trp W3.1%
UGA93
UGG26
Arg R2.0%
CGU15
CGC12
CGA36
CGG14
Gly G6.4%
GGU48
GGC59
GGA86
GGG52
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_084088.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 49.7% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,788 | 1,689 bp | + | 44.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,789 | 2,863 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,865 | 3,839 | 975 bp | + | 48.0% |
| tRNA-Ile | Transfer RNA | 3,844 | 3,914 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,914 | 3,984 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,986 | 4,054 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,055 | 5,099 | 1,045 bp | + | 48.3% |
| tRNA-Trp | Transfer RNA | 5,100 | 5,170 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,172 | 5,240 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,242 | 5,314 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,347 | 5,414 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,415 | 5,485 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,487 | 7,037 | 1,551 bp | + | 42.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,038 | 7,108 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,110 | 7,183 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,195 | 7,885 | 691 bp | + | 41.0% |
| tRNA-Lys | Transfer RNA | 7,886 | 7,961 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,963 | 8,127 | 165 bp | + | 38.8% |
| ATP6 | Protein-coding gene | 8,121 | 8,804 | 684 bp | + | 40.9% |
| COX3 | Protein-coding gene | 8,804 | 9,587 | 784 bp | + | 44.9% |
| tRNA-Gly | Transfer RNA | 9,588 | 9,659 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,660 | 10,008 | 349 bp | + | 43.3% |
| tRNA-Arg | Transfer RNA | 10,009 | 10,078 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,079 | 10,375 | 297 bp | + | 44.1% |
| ND4 | Protein-coding gene | 10,369 | 11,750 | 1,382 bp | + | 42.6% |
| tRNA-His | Transfer RNA | 11,751 | 11,819 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,820 | 11,888 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,890 | 11,962 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,963 | 13,798 | 1,836 bp | + | 44.3% |
| ND6 | Protein-coding gene | 13,795 | 14,316 | 522 bp | − | 48.3% |
| tRNA-Glu | Transfer RNA | 14,317 | 14,385 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,391 | 15,531 | 1,141 bp | + | 43.9% |
| tRNA-Thr | Transfer RNA | 15,532 | 15,603 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,603 | 15,672 | 70 bp | − | – |
| D-loop | Control region | 15,673 | 16,650 | 978 bp | – | 37.5% |