Capros aper
Boarfish
GC content
43.78%
Whole genome
Non-coding
378 bp
D-loop 319 bp
Where Boarfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Boarfish has the 464th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome15,976 bp
- GC skew (G − C) / (G + C)
- −0.218
- AT skew (A − T) / (A + T)
- −0.011
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,976 bp
Protein-coding11,407 bp
12S rRNA950 bp
16S rRNA1,690 bp
All tRNA1,551 bp
D-loop319 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.77% | −0.276 | −0.129 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 43.98% | −0.370 | −0.058 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.65% | −0.164 | −0.124 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.71% | −0.219 | −0.028 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.64% | −0.467 | −0.054 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 41.58% | −0.359 | −0.083 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.73% | −0.242 | −0.113 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.56% | −0.308 | −0.253 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 41.75% | −0.339 | −0.145 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.52% | −0.278 | −0.100 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 42.41% | −0.303 | −0.010 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.89% | −0.352 | +0.412 | |||||
| CYTBCytochrome b | 1,141 bp | 44.44% | −0.270 | −0.170 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 46.11% | −0.078 | +0.188 | |||||
| 16S rRNA16S ribosomal RNA | 1,690 bp | 43.61% | −0.056 | +0.177 | |||||
| D-loopControl region (D-loop) | 319 bp | 33.86% | +0.037 | +0.128 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU147
UUC96
Leu L16.7%
UUA141
UUG31
CUU186
CUC99
CUA139
CUG41
Ile I7.3%
AUU190
AUC88
Met M4.5%
AUA109
AUG61
Val V6.4%
GUU86
GUC63
GUA71
GUG24
Ser S6.3%
UCU63
UCC56
UCA55
UCG11
AGU16
AGC39
Pro P5.6%
CCU67
CCC85
CCA46
CCG14
Thr T8.0%
ACU72
ACC111
ACA107
ACG16
Ala A8.6%
GCU70
GCC131
GCA114
GCG11
Tyr Y3.0%
UAU59
UAC55
His H2.8%
CAU30
CAC75
Gln Q2.4%
CAA77
CAG16
Asn N3.0%
AAU39
AAC76
Lys K2.0%
AAA63
AAG15
Asp D1.9%
GAU31
GAC43
Glu E2.5%
GAA70
GAG25
Cys C0.7%
UGU10
UGC15
Trp W3.2%
UGA90
UGG30
Arg R1.9%
CGU11
CGC14
CGA39
CGG9
Gly G6.6%
GGU42
GGC89
GGA58
GGG63
Stop 0.2%
UAA6
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_010958.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,018 | 950 bp | + | 46.1% |
| tRNA-Val | Transfer RNA | 1,019 | 1,090 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,780 | 1,690 bp | + | 43.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,854 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 42.8% |
| tRNA-Ile | Transfer RNA | 3,836 | 3,905 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,905 | 3,975 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,975 | 4,044 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,090 | 1,046 bp | + | 44.0% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,161 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,162 | 5,230 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,232 | 5,304 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,404 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,405 | 5,474 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,476 | 7,026 | 1,551 bp | + | 43.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,028 | 7,098 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,102 | 7,172 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,179 | 7,869 | 691 bp | + | 43.7% |
| tRNA-Lys | Transfer RNA | 7,870 | 7,944 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,946 | 8,113 | 168 bp | + | 44.6% |
| ATP6 | Protein-coding gene | 8,104 | 8,786 | 683 bp | + | 41.6% |
| COX3 | Protein-coding gene | 8,787 | 9,571 | 785 bp | + | 45.7% |
| tRNA-Gly | Transfer RNA | 9,572 | 9,643 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,644 | 9,992 | 349 bp | + | 45.6% |
| tRNA-Arg | Transfer RNA | 9,993 | 10,061 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,063 | 10,359 | 297 bp | + | 41.8% |
| ND4 | Protein-coding gene | 10,353 | 11,733 | 1,381 bp | + | 43.5% |
| tRNA-His | Transfer RNA | 11,734 | 11,802 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,803 | 11,871 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,875 | 11,947 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,948 | 13,786 | 1,839 bp | + | 42.4% |
| ND6 | Protein-coding gene | 13,783 | 14,304 | 522 bp | − | 47.9% |
| tRNA-Glu | Transfer RNA | 14,305 | 14,373 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,376 | 15,516 | 1,141 bp | + | 44.4% |
| tRNA-Thr | Transfer RNA | 15,517 | 15,588 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,588 | 15,657 | 70 bp | − | – |
| D-loop | Control region | 15,658 | 15,976 | 319 bp | – | 33.9% |