MitoAge

Carpiodes carpio

River carpsucker

Add to compare Download FASTA
Maximum lifespan
10 yr
AnAge record
mtDNA size
16,611 bp
RefSeq NC_005257.1
GC content
45.85%
Whole genome
Non-coding
1,001 bp
D-loop 929 bp

Where River carpsucker sits among 2,335 species

Whole-genome GC content against maximum lifespan. River carpsucker has the 1,553rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %River carpsucker
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,611 bp
GC skew (G − C) / (G + C)
−0.197
AT skew (A − T) / (A + T)
+0.056

Life history

Maximum lifespan
10 years
Adult weight
2.5 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03860)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,611 bp
Protein-coding11,413 bp
12S rRNA952 bp
16S rRNA1,689 bp
All tRNA1,563 bp
D-loop929 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp26.5%25.4%18.3%29.8%48.10%−0.241+0.020
ND2NADH dehydrogenase subunit 21,047 bp26.4%23.9%17.0%32.8%49.76%−0.317+0.049
COX1Cytochrome c oxidase subunit I1,551 bp25.5%28.9%18.7%26.9%45.58%−0.180−0.064
COX2Cytochrome c oxidase subunit II691 bp28.7%28.4%17.8%25.2%42.98%−0.172+0.005
ATP8ATP synthase F0 subunit 8168 bp32.1%26.2%14.3%27.4%41.67%−0.314+0.102
ATP6ATP synthase F0 subunit 6684 bp27.6%30.3%15.4%26.8%42.11%−0.271−0.045
COX3Cytochrome c oxidase subunit III786 bp25.7%26.7%18.2%29.4%47.58%−0.235−0.019
ND3NADH dehydrogenase subunit 3351 bp23.4%29.3%18.5%28.8%47.29%−0.217−0.114
ND4LNADH dehydrogenase subunit 4L297 bp23.9%28.3%18.5%29.3%47.81%−0.225−0.084
ND4NADH dehydrogenase subunit 41,383 bp27.8%25.6%17.4%29.3%46.64%−0.256+0.041
ND5NADH dehydrogenase subunit 51,839 bp28.2%27.0%15.7%29.0%44.75%−0.298+0.022
ND6NADH dehydrogenase subunit 6522 bp36.2%13.8%18.0%32.0%50.00%−0.280+0.448
CYTBCytochrome b1,141 bp26.3%27.9%17.0%28.8%45.84%−0.258−0.029
12S rRNA12S ribosomal RNA952 bp30.7%20.2%23.0%26.2%49.16%−0.064+0.207
16S rRNA16S ribosomal RNA1,689 bp34.1%19.9%22.3%23.7%46.00%−0.030+0.263
D-loopControl region (D-loop)929 bp32.2%30.6%16.4%20.9%37.24%−0.121+0.026

Codon usage

Counts per codon, darker is more frequent

3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU85
UUC139
Leu L16.4%
UUA101
UUG36
CUU96
CUC110
CUA187
CUG95
Ile I7.3%
AUU165
AUC113
Met M4.5%
AUA79
AUG91
Val V6.2%
GUU54
GUC60
GUA94
GUG28
Ser S6.4%
UCU46
UCC53
UCA76
UCG12
AGU9
AGC47
Pro P5.7%
CCU32
CCC79
CCA88
CCG18
Thr T7.6%
ACU45
ACC104
ACA114
ACG25
Ala A9.4%
GCU62
GCC149
GCA126
GCG23
Tyr Y3.0%
UAU47
UAC68
His H2.8%
CAU36
CAC70
Gln Q2.6%
CAA76
CAG22
Asn N3.0%
AAU41
AAC73
Lys K2.0%
AAA61
AAG14
Asp D2.0%
GAU21
GAC56
Glu E2.8%
GAA68
GAG37
Cys C0.7%
UGU14
UGC12
Trp W3.1%
UGA92
UGG28
Arg R2.0%
CGU12
CGC12
CGA41
CGG11
Gly G6.5%
GGU29
GGC53
GGA107
GGG58
Stop 0.3%
UAA8
UAG3
AGA0
AGG0

Genome map

38 annotated features in NC_005257.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,020952 bp+49.2%
tRNA-ValTransfer RNA1,0211,09272 bp+–
16S rRNARibosomal RNA1,0932,7811,689 bp+46.0%
tRNA-Leu (UUR)Transfer RNA2,7812,85676 bp+–
ND1Protein-coding gene2,8573,831975 bp+48.1%
tRNA-IleTransfer RNA3,8403,91273 bp+–
tRNA-GlnTransfer RNA3,9103,98071 bp−–
tRNA-MetTransfer RNA3,9824,05069 bp+–
ND2Protein-coding gene4,0515,0971,047 bp+49.8%
tRNA-TrpTransfer RNA5,0965,16772 bp+–
tRNA-AlaTransfer RNA5,1695,23769 bp−–
tRNA-AsnTransfer RNA5,2395,31173 bp−–
tRNA-CysTransfer RNA5,3465,41267 bp−–
tRNA-TyrTransfer RNA5,4145,48572 bp−–
COX1Protein-coding gene5,4877,0371,551 bp+45.6%
tRNA-Ser (UCN)Transfer RNA7,0397,10971 bp−–
tRNA-AspTransfer RNA7,1137,18674 bp+–
COX2Protein-coding gene7,2017,891691 bp+43.0%
tRNA-LysTransfer RNA7,8927,96776 bp+–
ATP8Protein-coding gene7,9698,136168 bp+41.7%
ATP6Protein-coding gene8,1278,810684 bp+42.1%
COX3Protein-coding gene8,8109,595786 bp+47.6%
tRNA-GlyTransfer RNA9,5959,66672 bp+–
ND3Protein-coding gene9,66710,017351 bp+47.3%
tRNA-ArgTransfer RNA10,01610,08570 bp+–
ND4LProtein-coding gene10,08610,382297 bp+47.8%
ND4Protein-coding gene10,37611,7581,383 bp+46.6%
tRNA-HisTransfer RNA11,75811,82770 bp+–
tRNA-Ser (AGY)Transfer RNA11,82811,89568 bp+–
tRNA-Leu (CUN)Transfer RNA11,89711,96973 bp+–
ND5Protein-coding gene11,97013,8081,839 bp+44.8%
ND6Protein-coding gene13,80514,326522 bp−50.0%
tRNA-GluTransfer RNA14,32714,39468 bp−–
CYTBProtein-coding gene14,40015,5401,141 bp+45.8%
tRNA-ThrTransfer RNA15,54115,61272 bp+–
tRNA-ProTransfer RNA15,61215,68271 bp−–
D-loopControl region15,68316,611929 bp–37.2%

Downloads