Carpiodes cyprinus

Quillback

Maximum lifespan

11 yr

AnAge record

mtDNA size

16,610 bp

RefSeq NC_056404.1

GC content

45.77%

Whole genome

Non-coding

1,001 bp

D-loop 929 bp

Where Quillback sits among 2,335 species

Whole-genome GC content against maximum lifespan. Quillback has the 1,516th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,610 bp

GC skew (G − C) / (G + C): −0.196
AT skew (A − T) / (A + T): +0.054

Life history

Maximum lifespan: 11 years
Adult weight: 1.6 kg

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03861)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,610 bp

Protein-coding11,407 bp

12S rRNA951 bp

16S rRNA1,689 bp

All tRNA1,563 bp

D-loop929 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Carpiodes cyprinus genes

ND1NADH dehydrogenase subunit 1	975 bp	26.7%	25.8%	18.1%	29.4%	47.49%	−0.240	+0.016
ND2NADH dehydrogenase subunit 2	1,045 bp	25.4%	24.1%	17.9%	32.6%	50.53%	−0.292	+0.025
COX1Cytochrome c oxidase subunit I	1,551 bp	25.3%	29.3%	18.8%	26.6%	45.39%	−0.173	−0.074
COX2Cytochrome c oxidase subunit II	691 bp	28.1%	28.8%	18.4%	24.7%	43.13%	−0.148	−0.013
ATP8ATP synthase F0 subunit 8	168 bp	32.1%	26.2%	14.3%	27.4%	41.67%	−0.314	+0.102
ATP6ATP synthase F0 subunit 6	684 bp	27.3%	30.4%	15.5%	26.8%	42.25%	−0.266	−0.053
COX3Cytochrome c oxidase subunit III	785 bp	25.7%	27.1%	18.1%	29.0%	47.13%	−0.232	−0.027
ND3NADH dehydrogenase subunit 3	349 bp	24.1%	29.8%	17.8%	28.4%	46.13%	−0.230	−0.106
ND4LNADH dehydrogenase subunit 4L	297 bp	23.2%	29.0%	19.2%	28.6%	47.81%	−0.197	−0.110
ND4NADH dehydrogenase subunit 4	1,382 bp	27.6%	25.4%	17.5%	29.5%	47.03%	−0.255	+0.041
ND5NADH dehydrogenase subunit 5	1,839 bp	28.2%	27.1%	15.7%	29.1%	44.75%	−0.300	+0.020
ND6NADH dehydrogenase subunit 6	522 bp	37.2%	13.6%	17.0%	32.2%	49.23%	−0.307	+0.464
CYTBCytochrome b	1,141 bp	26.5%	28.0%	16.7%	28.7%	45.49%	−0.264	−0.029
12S rRNA12S ribosomal RNA	951 bp	30.7%	20.1%	23.0%	26.2%	49.21%	−0.064	+0.209
16S rRNA16S ribosomal RNA	1,689 bp	34.2%	19.8%	22.2%	23.7%	45.94%	−0.034	+0.266
D-loopControl region (D-loop)	929 bp	32.9%	30.4%	15.6%	21.1%	36.71%	−0.150	+0.041

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU85

UUC139

Leu L16.4%

UUA96

UUG41

CUU94

CUC113

CUA178

CUG103

Ile I7.2%

AUU166

AUC109

Met M4.4%

AUA77

AUG91

Val V6.3%

GUU59

GUC59

GUA93

GUG30

Ser S6.4%

UCU47

UCC54

UCA76

UCG11

AGU9

AGC48

Pro P5.7%

CCU34

CCC77

CCA87

CCG18

Thr T7.5%

ACU46

ACC103

ACA108

ACG30

Ala A9.5%

GCU68

GCC144

GCA129

GCG21

Tyr Y3.0%

UAU49

UAC66

His H2.8%

CAU38

CAC68

Gln Q2.6%

CAA76

CAG22

Asn N3.0%

AAU42

AAC71

Lys K2.0%

AAA61

AAG14

Asp D2.0%

GAU23

GAC54

Glu E2.8%

GAA67

GAG38

Cys C0.7%

UGU15

UGC11

Trp W3.2%

UGA97

UGG23

Arg R2.0%

CGU12

CGC12

CGA41

CGG11

Gly G6.5%

GGU33

GGC48

GGA113

GGG52

Stop 0.2%

UAA7

UAG0

AGA0

AGG0

Genome map

38 annotated features in NC_056404.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Carpiodes cyprinus (NC_056404.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,019	951 bp	+	49.2%
tRNA-Val	Transfer RNA	1,020	1,091	72 bp	+	–
16S rRNA	Ribosomal RNA	1,092	2,780	1,689 bp	+	45.9%
tRNA-Leu (UUR)	Transfer RNA	2,780	2,855	76 bp	+	–
ND1	Protein-coding gene	2,856	3,830	975 bp	+	47.5%
tRNA-Ile	Transfer RNA	3,839	3,911	73 bp	+	–
tRNA-Gln	Transfer RNA	3,909	3,979	71 bp	−	–
tRNA-Met	Transfer RNA	3,981	4,049	69 bp	+	–
ND2	Protein-coding gene	4,050	5,094	1,045 bp	+	50.5%
tRNA-Trp	Transfer RNA	5,095	5,166	72 bp	+	–
tRNA-Ala	Transfer RNA	5,168	5,236	69 bp	−	–
tRNA-Asn	Transfer RNA	5,238	5,310	73 bp	−	–
tRNA-Cys	Transfer RNA	5,345	5,411	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,413	5,484	72 bp	−	–
COX1	Protein-coding gene	5,486	7,036	1,551 bp	+	45.4%
tRNA-Ser (UCN)	Transfer RNA	7,038	7,108	71 bp	−	–
tRNA-Asp	Transfer RNA	7,112	7,185	74 bp	+	–
COX2	Protein-coding gene	7,200	7,890	691 bp	+	43.1%
tRNA-Lys	Transfer RNA	7,891	7,966	76 bp	+	–
ATP8	Protein-coding gene	7,968	8,135	168 bp	+	41.7%
ATP6	Protein-coding gene	8,126	8,809	684 bp	+	42.3%
COX3	Protein-coding gene	8,809	9,593	785 bp	+	47.1%
tRNA-Gly	Transfer RNA	9,594	9,665	72 bp	+	–
ND3	Protein-coding gene	9,666	10,014	349 bp	+	46.1%
tRNA-Arg	Transfer RNA	10,015	10,084	70 bp	+	–
ND4L	Protein-coding gene	10,085	10,381	297 bp	+	47.8%
ND4	Protein-coding gene	10,375	11,756	1,382 bp	+	47.0%
tRNA-His	Transfer RNA	11,757	11,826	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,827	11,894	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,896	11,968	73 bp	+	–
ND5	Protein-coding gene	11,969	13,807	1,839 bp	+	44.8%
ND6	Protein-coding gene	13,804	14,325	522 bp	−	49.2%
tRNA-Glu	Transfer RNA	14,326	14,393	68 bp	−	–
CYTB	Protein-coding gene	14,399	15,539	1,141 bp	+	45.5%
tRNA-Thr	Transfer RNA	15,540	15,611	72 bp	+	–
tRNA-Pro	Transfer RNA	15,611	15,681	71 bp	−	–
D-loop	Control region	15,682	16,610	929 bp	–	36.7%