MitoAge

Catostomus commersonii

White sucker

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Maximum lifespan
12 yr
AnAge record
mtDNA size
16,625 bp
RefSeq NC_008647.1
GC content
42.93%
Whole genome
Non-coding
1,032 bp
D-loop 951 bp

Where White sucker sits among 2,335 species

Whole-genome GC content against maximum lifespan. White sucker has the 1,406th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %White sucker
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,625 bp
GC skew (G − C) / (G + C)
−0.180
AT skew (A − T) / (A + T)
+0.027

Life history

Maximum lifespan
12 years
Adult weight
1.6 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03864)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,625 bp
Protein-coding11,412 bp
12S rRNA950 bp
16S rRNA1,681 bp
All tRNA1,555 bp
D-loop951 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp26.9%29.3%17.6%26.2%43.80%−0.194−0.044
ND2NADH dehydrogenase subunit 21,047 bp26.4%28.4%16.0%29.2%45.27%−0.291−0.037
COX1Cytochrome c oxidase subunit I1,551 bp26.6%31.9%18.0%23.5%41.52%−0.134−0.089
COX2Cytochrome c oxidase subunit II691 bp28.9%29.5%17.2%24.3%41.53%−0.171−0.010
ATP8ATP synthase F0 subunit 8168 bp34.5%25.6%12.5%27.4%39.88%−0.373+0.149
ATP6ATP synthase F0 subunit 6684 bp28.4%31.9%14.5%25.3%39.77%−0.272−0.058
COX3Cytochrome c oxidase subunit III785 bp26.9%29.6%17.1%26.5%43.57%−0.216−0.047
ND3NADH dehydrogenase subunit 3351 bp25.1%33.0%16.2%25.6%41.88%−0.224−0.137
ND4LNADH dehydrogenase subunit 4L297 bp26.3%31.0%16.2%26.6%42.76%−0.244−0.082
ND4NADH dehydrogenase subunit 41,383 bp29.4%29.6%15.6%25.4%41.00%−0.238−0.005
ND5NADH dehydrogenase subunit 51,839 bp28.5%30.5%15.0%25.9%40.95%−0.267−0.033
ND6NADH dehydrogenase subunit 6522 bp39.7%16.5%14.0%29.9%43.87%−0.362+0.413
CYTBCytochrome b1,141 bp26.2%30.0%16.7%27.1%43.82%−0.236−0.067
12S rRNA12S ribosomal RNA950 bp30.0%20.4%23.6%26.0%49.58%−0.049+0.190
16S rRNA16S ribosomal RNA1,681 bp34.6%20.8%21.7%23.0%44.62%−0.029+0.248
D-loopControl region (D-loop)951 bp33.3%30.1%16.1%20.5%36.59%−0.121+0.051

Codon usage

Counts per codon, darker is more frequent

3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU132
UUC93
Leu L16.3%
UUA149
UUG36
CUU123
CUC74
CUA195
CUG44
Ile I7.4%
AUU208
AUC74
Met M4.4%
AUA104
AUG63
Val V6.4%
GUU75
GUC37
GUA108
GUG24
Ser S6.5%
UCU51
UCC54
UCA72
UCG12
AGU23
AGC35
Pro P5.6%
CCU57
CCC61
CCA86
CCG9
Thr T7.4%
ACU54
ACC98
ACA109
ACG21
Ala A9.4%
GCU91
GCC127
GCA122
GCG18
Tyr Y3.0%
UAU71
UAC44
His H2.8%
CAU41
CAC65
Gln Q2.5%
CAA86
CAG11
Asn N3.0%
AAU63
AAC50
Lys K2.0%
AAA53
AAG22
Asp D2.0%
GAU31
GAC47
Glu E2.8%
GAA70
GAG35
Cys C0.7%
UGU13
UGC14
Trp W3.2%
UGA96
UGG25
Arg R2.0%
CGU12
CGC13
CGA38
CGG14
Gly G6.5%
GGU43
GGC43
GGA124
GGG37
Stop 0.3%
UAA7
UAG3
AGA0
AGG0

Genome map

38 annotated features in NC_008647.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (42.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,019950 bp+49.6%
tRNA-ValTransfer RNA1,0201,09172 bp+–
16S rRNARibosomal RNA1,0922,7721,681 bp+44.6%
tRNA-Leu (UUR)Transfer RNA2,7732,84775 bp+–
ND1Protein-coding gene2,8493,823975 bp+43.8%
tRNA-IleTransfer RNA3,8333,90472 bp+–
tRNA-GlnTransfer RNA3,9033,97371 bp−–
tRNA-MetTransfer RNA3,9754,04369 bp+–
ND2Protein-coding gene4,0445,0901,047 bp+45.3%
tRNA-TrpTransfer RNA5,0895,16173 bp−–
tRNA-AlaTransfer RNA5,1635,23169 bp−–
tRNA-AsnTransfer RNA5,2335,30573 bp−–
tRNA-CysTransfer RNA5,3415,40666 bp−–
tRNA-TyrTransfer RNA5,4085,47871 bp−–
COX1Protein-coding gene5,4807,0301,551 bp+41.5%
tRNA-Ser (AGY)Transfer RNA7,0327,10271 bp−–
tRNA-AspTransfer RNA7,1057,17874 bp+–
COX2Protein-coding gene7,1937,883691 bp+41.5%
tRNA-LysTransfer RNA7,8847,95976 bp+–
ATP8Protein-coding gene7,9618,128168 bp+39.9%
ATP6Protein-coding gene8,1198,802684 bp+39.8%
COX3Protein-coding gene8,8029,586785 bp+43.6%
tRNA-GlyTransfer RNA9,5879,65872 bp+–
ND3Protein-coding gene9,65910,009351 bp+41.9%
tRNA-ArgTransfer RNA10,00810,07770 bp+–
ND4LProtein-coding gene10,07810,374297 bp+42.8%
ND4Protein-coding gene10,36811,7501,383 bp+41.0%
tRNA-HisTransfer RNA11,75011,81970 bp+–
tRNA-Ser (UCN)Transfer RNA11,82811,88760 bp+–
tRNA-Leu (CUN)Transfer RNA11,88911,96173 bp+–
ND5Protein-coding gene11,96213,8001,839 bp+41.0%
ND6Protein-coding gene13,79714,318522 bp−43.9%
tRNA-GluTransfer RNA14,31914,38769 bp−–
CYTBProtein-coding gene14,39215,5321,141 bp+43.8%
tRNA-ThrTransfer RNA15,53315,60472 bp+–
tRNA-ProTransfer RNA15,60415,67471 bp−–
D-loopControl region15,67516,625951 bp–36.6%

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