Catostomus occidentalis
Sacramento sucker
GC content
43.93%
Whole genome
Non-coding
1,027 bp
D-loop 854 bp
Where Sacramento sucker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Sacramento sucker has the 1,595th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,622 bp
- GC skew (G − C) / (G + C)
- −0.185
- AT skew (A − T) / (A + T)
- +0.031
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,622 bp
Protein-coding11,406 bp
12S rRNA950 bp
16S rRNA1,677 bp
All tRNA1,562 bp
D-loop854 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.82% | −0.217 | −0.037 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 47.37% | −0.269 | −0.055 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.81% | −0.142 | −0.089 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.69% | −0.200 | +0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.07% | −0.391 | +0.131 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.67% | −0.256 | −0.053 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.77% | −0.185 | −0.076 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.69% | −0.221 | −0.120 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.44% | −0.227 | −0.091 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.55% | −0.231 | −0.003 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.44% | −0.297 | −0.012 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.98% | −0.342 | +0.411 | |||||
| CYTBCytochrome b | 1,141 bp | 45.14% | −0.258 | −0.058 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 49.90% | −0.055 | +0.197 | |||||
| 16S rRNA16S ribosomal RNA | 1,677 bp | 45.14% | −0.025 | +0.250 | |||||
| D-loopControl region (D-loop) | 854 bp | 36.89% | −0.111 | +0.046 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU123
UUC103
Leu L16.4%
UUA138
UUG35
CUU121
CUC77
CUA202
CUG53
Ile I7.4%
AUU201
AUC81
Met M4.2%
AUA97
AUG62
Val V6.4%
GUU67
GUC42
GUA99
GUG35
Ser S6.5%
UCU49
UCC58
UCA73
UCG7
AGU19
AGC42
Pro P5.6%
CCU49
CCC76
CCA80
CCG8
Thr T7.5%
ACU49
ACC99
ACA117
ACG21
Ala A9.5%
GCU85
GCC137
GCA112
GCG26
Tyr Y3.0%
UAU66
UAC50
His H2.8%
CAU33
CAC73
Gln Q2.5%
CAA77
CAG20
Asn N2.9%
AAU59
AAC53
Lys K2.0%
AAA47
AAG28
Asp D2.0%
GAU27
GAC50
Glu E2.8%
GAA73
GAG32
Cys C0.7%
UGU10
UGC16
Trp W3.2%
UGA93
UGG28
Arg R2.0%
CGU10
CGC15
CGA45
CGG7
Gly G6.4%
GGU43
GGC38
GGA108
GGG56
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_066956.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,019 | 950 bp | + | 49.9% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,768 | 1,677 bp | + | 45.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,769 | 2,845 | 77 bp | + | – |
| ND1 | Protein-coding gene | 2,846 | 3,820 | 975 bp | + | 44.8% |
| tRNA-Ile | Transfer RNA | 3,829 | 3,902 | 74 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,900 | 3,971 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,040 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,041 | 5,085 | 1,045 bp | + | 47.4% |
| tRNA-Trp | Transfer RNA | 5,086 | 5,158 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,228 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,230 | 5,302 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,338 | 5,407 | 70 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,404 | 5,476 | 73 bp | − | – |
| COX1 | Protein-coding gene | 5,478 | 7,028 | 1,551 bp | + | 42.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,030 | 7,100 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,103 | 7,167 | 65 bp | + | – |
| COX2 | Protein-coding gene | 7,191 | 7,881 | 691 bp | + | 42.7% |
| tRNA-Lys | Transfer RNA | 7,882 | 7,957 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,959 | 8,126 | 168 bp | + | 41.1% |
| ATP6 | Protein-coding gene | 8,117 | 8,800 | 684 bp | + | 41.7% |
| COX3 | Protein-coding gene | 8,800 | 9,583 | 784 bp | + | 44.8% |
| tRNA-Gly | Transfer RNA | 9,585 | 9,656 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,657 | 10,005 | 349 bp | + | 42.7% |
| tRNA-Arg | Transfer RNA | 10,006 | 10,075 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,076 | 10,372 | 297 bp | + | 44.4% |
| ND4 | Protein-coding gene | 10,366 | 11,747 | 1,382 bp | + | 42.6% |
| tRNA-His | Transfer RNA | 11,748 | 11,817 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,818 | 11,885 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,887 | 11,959 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,960 | 13,798 | 1,839 bp | + | 41.4% |
| ND6 | Protein-coding gene | 13,795 | 14,316 | 522 bp | − | 46.0% |
| tRNA-Glu | Transfer RNA | 14,317 | 14,384 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,390 | 15,530 | 1,141 bp | + | 45.1% |
| tRNA-Thr | Transfer RNA | 15,531 | 15,602 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,601 | 15,676 | 76 bp | − | – |
| D-loop | Control region | 15,686 | 16,539 | 854 bp | – | 36.9% |