Catostomus rimiculus
Klamath smallscale sucker
GC content
44.03%
Whole genome
Non-coding
1,028 bp
D-loop 856 bp
Where Klamath smallscale sucker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Klamath smallscale sucker has the 1,672nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,627 bp
- GC skew (G − C) / (G + C)
- −0.180
- AT skew (A − T) / (A + T)
- +0.026
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,627 bp
Protein-coding11,406 bp
12S rRNA950 bp
16S rRNA1,681 bp
All tRNA1,562 bp
D-loop856 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.95% | −0.183 | −0.066 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 47.27% | −0.267 | −0.045 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.81% | −0.142 | −0.087 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.97% | −0.193 | +0.007 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.07% | −0.362 | +0.131 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.54% | −0.244 | −0.064 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.77% | −0.214 | −0.053 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 41.83% | −0.233 | −0.113 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.46% | −0.200 | −0.111 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.91% | −0.224 | −0.001 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.22% | −0.301 | −0.018 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.295 | +0.374 | |||||
| CYTBCytochrome b | 1,141 bp | 44.70% | −0.247 | −0.071 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 49.58% | −0.062 | +0.203 | |||||
| 16S rRNA16S ribosomal RNA | 1,681 bp | 45.57% | −0.026 | +0.244 | |||||
| D-loopControl region (D-loop) | 856 bp | 36.80% | −0.111 | +0.031 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU118
UUC108
Leu L16.4%
UUA137
UUG35
CUU125
CUC73
CUA195
CUG60
Ile I7.3%
AUU203
AUC76
Met M4.2%
AUA100
AUG61
Val V6.5%
GUU70
GUC41
GUA99
GUG36
Ser S6.5%
UCU48
UCC60
UCA69
UCG11
AGU18
AGC43
Pro P5.6%
CCU49
CCC74
CCA81
CCG8
Thr T7.5%
ACU44
ACC106
ACA115
ACG21
Ala A9.4%
GCU83
GCC139
GCA111
GCG26
Tyr Y3.0%
UAU63
UAC52
His H2.8%
CAU39
CAC68
Gln Q2.5%
CAA78
CAG19
Asn N2.9%
AAU62
AAC50
Lys K2.0%
AAA50
AAG25
Asp D2.0%
GAU25
GAC52
Glu E2.8%
GAA68
GAG37
Cys C0.7%
UGU10
UGC16
Trp W3.2%
UGA96
UGG25
Arg R2.0%
CGU11
CGC14
CGA42
CGG10
Gly G6.4%
GGU41
GGC39
GGA111
GGG54
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_066944.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,019 | 950 bp | + | 49.6% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,772 | 1,681 bp | + | 45.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,773 | 2,849 | 77 bp | + | – |
| ND1 | Protein-coding gene | 2,850 | 3,824 | 975 bp | + | 46.0% |
| tRNA-Ile | Transfer RNA | 3,833 | 3,906 | 74 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,904 | 3,975 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,089 | 1,045 bp | + | 47.3% |
| tRNA-Trp | Transfer RNA | 5,090 | 5,162 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,165 | 5,232 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,234 | 5,306 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,410 | 70 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,407 | 5,479 | 73 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 42.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,170 | 65 bp | + | – |
| COX2 | Protein-coding gene | 7,194 | 7,884 | 691 bp | + | 42.0% |
| tRNA-Lys | Transfer RNA | 7,885 | 7,960 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,962 | 8,129 | 168 bp | + | 41.1% |
| ATP6 | Protein-coding gene | 8,120 | 8,803 | 684 bp | + | 42.5% |
| COX3 | Protein-coding gene | 8,803 | 9,586 | 784 bp | + | 44.8% |
| tRNA-Gly | Transfer RNA | 9,588 | 9,659 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,660 | 10,008 | 349 bp | + | 41.8% |
| tRNA-Arg | Transfer RNA | 10,009 | 10,078 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,079 | 10,375 | 297 bp | + | 45.5% |
| ND4 | Protein-coding gene | 10,369 | 11,750 | 1,382 bp | + | 42.9% |
| tRNA-His | Transfer RNA | 11,751 | 11,820 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,821 | 11,888 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,890 | 11,962 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,963 | 13,801 | 1,839 bp | + | 41.2% |
| ND6 | Protein-coding gene | 13,798 | 14,319 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 14,320 | 14,387 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,393 | 15,533 | 1,141 bp | + | 44.7% |
| tRNA-Thr | Transfer RNA | 15,534 | 15,605 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,604 | 15,679 | 76 bp | − | – |
| D-loop | Control region | 15,689 | 16,544 | 856 bp | – | 36.8% |