Catostomus tahoensis
Tahoe sucker
GC content
43.79%
Whole genome
Non-coding
1,025 bp
D-loop 853 bp
Where Tahoe sucker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Tahoe sucker has the 1,242nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,623 bp
- GC skew (G − C) / (G + C)
- −0.175
- AT skew (A − T) / (A + T)
- +0.024
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,623 bp
Protein-coding11,406 bp
12S rRNA950 bp
16S rRNA1,680 bp
All tRNA1,562 bp
D-loop853 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.18% | −0.211 | −0.032 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.13% | −0.229 | −0.085 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.17% | −0.135 | −0.097 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.11% | −0.175 | −0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.67% | −0.400 | +0.184 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.21% | −0.324 | −0.027 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.77% | −0.225 | −0.039 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.12% | −0.211 | −0.139 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.47% | −0.217 | −0.094 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 43.13% | −0.218 | −0.013 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.76% | −0.268 | −0.033 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.279 | +0.367 | |||||
| CYTBCytochrome b | 1,141 bp | 44.61% | −0.226 | −0.079 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 49.16% | −0.058 | +0.193 | |||||
| 16S rRNA16S ribosomal RNA | 1,680 bp | 45.00% | −0.026 | +0.251 | |||||
| D-loopControl region (D-loop) | 853 bp | 37.75% | −0.118 | +0.040 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU119
UUC107
Leu L16.3%
UUA132
UUG36
CUU125
CUC76
CUA193
CUG59
Ile I7.2%
AUU200
AUC74
Met M4.3%
AUA102
AUG62
Val V6.6%
GUU70
GUC47
GUA110
GUG26
Ser S6.5%
UCU55
UCC52
UCA71
UCG11
AGU20
AGC38
Pro P5.6%
CCU50
CCC69
CCA84
CCG10
Thr T7.4%
ACU46
ACC106
ACA106
ACG23
Ala A9.4%
GCU86
GCC134
GCA116
GCG23
Tyr Y3.0%
UAU70
UAC46
His H2.8%
CAU40
CAC66
Gln Q2.5%
CAA76
CAG21
Asn N3.0%
AAU61
AAC53
Lys K1.9%
AAA53
AAG21
Asp D2.0%
GAU31
GAC47
Glu E2.8%
GAA75
GAG30
Cys C0.7%
UGU10
UGC16
Trp W3.2%
UGA90
UGG31
Arg R2.0%
CGU11
CGC14
CGA39
CGG13
Gly G6.5%
GGU42
GGC42
GGA112
GGG52
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_066950.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,019 | 950 bp | + | 49.2% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,771 | 1,680 bp | + | 45.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,772 | 2,848 | 77 bp | + | – |
| ND1 | Protein-coding gene | 2,849 | 3,823 | 975 bp | + | 43.2% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,905 | 74 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,974 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,975 | 4,043 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,044 | 5,088 | 1,045 bp | + | 48.1% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,161 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,164 | 5,231 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,233 | 5,305 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,340 | 5,409 | 70 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,406 | 5,478 | 73 bp | − | – |
| COX1 | Protein-coding gene | 5,480 | 7,030 | 1,551 bp | + | 42.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,105 | 7,169 | 65 bp | + | – |
| COX2 | Protein-coding gene | 7,193 | 7,883 | 691 bp | + | 42.1% |
| tRNA-Lys | Transfer RNA | 7,884 | 7,959 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,961 | 8,128 | 168 bp | + | 41.7% |
| ATP6 | Protein-coding gene | 8,119 | 8,802 | 684 bp | + | 40.2% |
| COX3 | Protein-coding gene | 8,802 | 9,585 | 784 bp | + | 44.8% |
| tRNA-Gly | Transfer RNA | 9,587 | 9,658 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,659 | 10,007 | 349 bp | + | 42.1% |
| tRNA-Arg | Transfer RNA | 10,008 | 10,077 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,078 | 10,374 | 297 bp | + | 46.5% |
| ND4 | Protein-coding gene | 10,368 | 11,749 | 1,382 bp | + | 43.1% |
| tRNA-His | Transfer RNA | 11,750 | 11,819 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,820 | 11,887 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,889 | 11,961 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,962 | 13,800 | 1,839 bp | + | 41.8% |
| ND6 | Protein-coding gene | 13,797 | 14,318 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 14,319 | 14,386 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,392 | 15,532 | 1,141 bp | + | 44.6% |
| tRNA-Thr | Transfer RNA | 15,533 | 15,604 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,603 | 15,678 | 76 bp | − | – |
| D-loop | Control region | 15,688 | 16,540 | 853 bp | – | 37.8% |