Cephalopholis miniata
Bluespot rockcod
GC content
44.72%
Whole genome
Non-coding
962 bp
D-loop 878 bp
Where Bluespot rockcod sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bluespot rockcod has the 653rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,585 bp
- GC skew (G − C) / (G + C)
- −0.276
- AT skew (A − T) / (A + T)
- +0.057
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,585 bp
Protein-coding11,407 bp
12S rRNA954 bp
16S rRNA1,709 bp
All tRNA1,553 bp
D-loop878 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.97% | −0.389 | +0.006 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.90% | −0.485 | +0.108 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.52% | −0.201 | −0.093 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.11% | −0.265 | +0.050 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.353 | +0.060 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.40% | −0.400 | −0.005 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.33% | −0.259 | −0.048 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.27% | −0.342 | −0.110 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.81% | −0.338 | −0.123 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.61% | −0.383 | +0.027 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.08% | −0.411 | +0.077 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.40% | −0.384 | +0.326 | |||||
| CYTBCytochrome b | 1,141 bp | 44.61% | −0.340 | −0.047 | |||||
| 12S rRNA12S ribosomal RNA | 954 bp | 47.69% | −0.081 | +0.170 | |||||
| 16S rRNA16S ribosomal RNA | 1,709 bp | 46.11% | −0.099 | +0.244 | |||||
| D-loopControl region (D-loop) | 878 bp | 36.22% | −0.182 | +0.021 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU73
UUC166
Leu L16.8%
UUA75
UUG16
CUU148
CUC119
CUA238
CUG45
Ile I7.2%
AUU142
AUC131
Met M4.2%
AUA101
AUG59
Val V5.8%
GUU60
GUC47
GUA97
GUG16
Ser S6.2%
UCU41
UCC72
UCA67
UCG7
AGU6
AGC44
Pro P5.8%
CCU46
CCC83
CCA88
CCG2
Thr T8.2%
ACU58
ACC108
ACA135
ACG10
Ala A9.1%
GCU72
GCC139
GCA124
GCG13
Tyr Y2.9%
UAU39
UAC70
His H2.8%
CAU33
CAC74
Gln Q2.6%
CAA87
CAG11
Asn N3.1%
AAU43
AAC75
Lys K2.0%
AAA71
AAG6
Asp D2.2%
GAU31
GAC51
Glu E2.5%
GAA87
GAG9
Cys C0.7%
UGU9
UGC17
Trp W3.1%
UGA101
UGG17
Arg R2.0%
CGU10
CGC9
CGA50
CGG8
Gly G6.4%
GGU50
GGC71
GGA87
GGG36
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_060350.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,024 | 954 bp | + | 47.7% |
| tRNA-Val | Transfer RNA | 1,025 | 1,095 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,096 | 2,804 | 1,709 bp | + | 46.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,805 | 2,879 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,880 | 3,854 | 975 bp | + | 47.0% |
| tRNA-Ile | Transfer RNA | 3,860 | 3,929 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,929 | 3,999 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,000 | 4,068 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,069 | 5,114 | 1,046 bp | + | 47.9% |
| tRNA-Trp | Transfer RNA | 5,115 | 5,185 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,187 | 5,255 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,257 | 5,329 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,368 | 5,435 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,436 | 5,506 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,508 | 7,058 | 1,551 bp | + | 45.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,060 | 7,131 | 72 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,135 | 7,207 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,217 | 7,907 | 691 bp | + | 42.1% |
| tRNA-Lys | Transfer RNA | 7,908 | 7,980 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,982 | 8,149 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 8,140 | 8,823 | 684 bp | + | 42.4% |
| COX3 | Protein-coding gene | 8,823 | 9,607 | 785 bp | + | 44.3% |
| tRNA-Gly | Transfer RNA | 9,608 | 9,679 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,680 | 10,028 | 349 bp | + | 45.3% |
| tRNA-Arg | Transfer RNA | 10,029 | 10,097 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,098 | 10,394 | 297 bp | + | 47.8% |
| ND4 | Protein-coding gene | 10,388 | 11,768 | 1,381 bp | + | 44.6% |
| tRNA-His | Transfer RNA | 11,769 | 11,839 | 71 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,840 | 11,901 | 62 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,922 | 11,994 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,995 | 13,833 | 1,839 bp | + | 45.1% |
| ND6 | Protein-coding gene | 13,830 | 14,351 | 522 bp | − | 45.4% |
| tRNA-Glu | Transfer RNA | 14,352 | 14,420 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,425 | 15,565 | 1,141 bp | + | 44.6% |
| tRNA-Thr | Transfer RNA | 15,566 | 15,638 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,638 | 15,707 | 70 bp | − | – |
| D-loop | Control region | 15,708 | 16,585 | 878 bp | – | 36.2% |