Cephalopholis urodeta
Darkfin hind
GC content
44.36%
Whole genome
Non-coding
950 bp
D-loop 877 bp
Where Darkfin hind sits among 2,335 species
Whole-genome GC content against maximum lifespan. Darkfin hind has the 1,593rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,592 bp
- GC skew (G − C) / (G + C)
- −0.279
- AT skew (A − T) / (A + T)
- +0.059
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,592 bp
Protein-coding11,407 bp
12S rRNA957 bp
16S rRNA1,715 bp
All tRNA1,563 bp
D-loop877 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.36% | −0.385 | −0.002 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.80% | −0.480 | +0.106 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.33% | −0.185 | −0.113 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.42% | −0.260 | +0.049 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 43.45% | −0.315 | +0.074 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.96% | −0.415 | +0.008 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.48% | −0.305 | −0.019 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.28% | −0.406 | −0.109 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.396 | −0.041 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.17% | −0.387 | +0.017 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.67% | −0.417 | +0.083 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.59% | −0.345 | +0.352 | |||||
| CYTBCytochrome b | 1,141 bp | 45.14% | −0.340 | −0.067 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 47.23% | −0.089 | +0.164 | |||||
| 16S rRNA16S ribosomal RNA | 1,715 bp | 45.42% | −0.091 | +0.239 | |||||
| D-loopControl region (D-loop) | 877 bp | 35.01% | −0.153 | +0.070 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU80
UUC158
Leu L16.9%
UUA94
UUG12
CUU137
CUC126
CUA241
CUG33
Ile I7.2%
AUU144
AUC130
Met M4.3%
AUA100
AUG63
Val V5.9%
GUU58
GUC56
GUA96
GUG13
Ser S6.3%
UCU39
UCC74
UCA68
UCG7
AGU4
AGC46
Pro P5.7%
CCU48
CCC88
CCA75
CCG7
Thr T8.0%
ACU46
ACC115
ACA129
ACG13
Ala A9.2%
GCU84
GCC128
GCA130
GCG7
Tyr Y2.9%
UAU39
UAC70
His H2.8%
CAU30
CAC76
Gln Q2.6%
CAA93
CAG7
Asn N3.2%
AAU42
AAC78
Lys K2.0%
AAA73
AAG4
Asp D2.1%
GAU31
GAC49
Glu E2.5%
GAA82
GAG13
Cys C0.7%
UGU13
UGC14
Trp W3.1%
UGA104
UGG13
Arg R2.0%
CGU12
CGC10
CGA47
CGG9
Gly G6.4%
GGU53
GGC74
GGA88
GGG27
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_030057.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,027 | 957 bp | + | 47.2% |
| tRNA-Val | Transfer RNA | 1,028 | 1,098 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,814 | 1,715 bp | + | 45.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,815 | 2,889 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,890 | 3,864 | 975 bp | + | 46.4% |
| tRNA-Ile | Transfer RNA | 3,871 | 3,940 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,939 | 4,009 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,010 | 4,078 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,079 | 5,124 | 1,046 bp | + | 47.8% |
| tRNA-Trp | Transfer RNA | 5,125 | 5,195 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,197 | 5,265 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,266 | 5,338 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,378 | 5,445 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,446 | 5,516 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,518 | 7,068 | 1,551 bp | + | 43.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,069 | 7,139 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,143 | 7,215 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,224 | 7,914 | 691 bp | + | 43.4% |
| tRNA-Lys | Transfer RNA | 7,915 | 7,987 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,989 | 8,156 | 168 bp | + | 43.5% |
| ATP6 | Protein-coding gene | 8,147 | 8,830 | 684 bp | + | 42.0% |
| COX3 | Protein-coding gene | 8,830 | 9,614 | 785 bp | + | 45.5% |
| tRNA-Gly | Transfer RNA | 9,615 | 9,686 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,687 | 10,035 | 349 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 10,036 | 10,104 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,105 | 10,401 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,395 | 11,775 | 1,381 bp | + | 44.2% |
| tRNA-His | Transfer RNA | 11,776 | 11,845 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,846 | 11,920 | 75 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,930 | 12,002 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,003 | 13,841 | 1,839 bp | + | 43.7% |
| ND6 | Protein-coding gene | 13,838 | 14,359 | 522 bp | − | 45.6% |
| tRNA-Glu | Transfer RNA | 14,360 | 14,428 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,433 | 15,573 | 1,141 bp | + | 45.1% |
| tRNA-Thr | Transfer RNA | 15,574 | 15,646 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,646 | 15,715 | 70 bp | − | – |
| D-loop | Control region | 15,716 | 16,592 | 877 bp | – | 35.0% |