Ceratitis capitata
Mediterranean fruit fly
GC content
22.52%
Whole genome
Non-coding
1,224 bp
Including the D-loop
Where Mediterranean fruit fly sits among 2,335 species
Whole-genome GC content against maximum lifespan. Mediterranean fruit fly has the 2,331st longest lifespan of them.
- This species
- All other species
Base composition
Whole genome15,980 bp
- GC skew (G − C) / (G + C)
- −0.185
- AT skew (A − T) / (A + T)
- +0.021
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, large sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,980 bp
Protein-coding11,173 bp
12S rRNA788 bp
16S rRNA1,335 bp
All tRNA1,464 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 940 bp | 23.62% | −0.270 | +0.279 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,023 bp | 20.04% | −0.229 | −0.161 | |||||
| COX1Cytochrome c oxidase subunit I | 1,536 bp | 30.66% | −0.023 | −0.131 | |||||
| COX2Cytochrome c oxidase subunit II | 687 bp | 27.95% | −0.073 | −0.055 | |||||
| ATP8ATP synthase F0 subunit 8 | 162 bp | 22.22% | −0.500 | +0.016 | |||||
| ATP6ATP synthase F0 subunit 6 | 678 bp | 27.29% | −0.157 | −0.185 | |||||
| COX3Cytochrome c oxidase subunit III | 789 bp | 29.79% | −0.098 | −0.162 | |||||
| ND3NADH dehydrogenase subunit 3 | 354 bp | 20.34% | −0.139 | −0.135 | |||||
| ND4LNADH dehydrogenase subunit 4L | 291 bp | 18.21% | −0.321 | +0.235 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,341 bp | 21.48% | −0.319 | +0.221 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,720 bp | 21.86% | −0.287 | +0.220 | |||||
| ND6NADH dehydrogenase subunit 6 | 525 bp | 18.10% | −0.326 | −0.079 | |||||
| CYTBCytochrome b | 1,137 bp | 26.65% | −0.109 | −0.094 | |||||
| 12S rRNA12S ribosomal RNA | 788 bp | 22.34% | −0.250 | +0.052 | |||||
| 16S rRNA16S ribosomal RNA | 1,335 bp | 18.28% | −0.279 | +0.061 |
Codon usage
Counts per codon, darker is more frequent3,727 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F9.1%
UUU321
UUC20
Leu L16.1%
UUA477
UUG30
CUU61
CUC0
CUA31
CUG1
Ile I10.0%
AUU350
AUC21
Met M5.3%
AUA181
AUG17
Val V5.1%
GUU112
GUC4
GUA70
GUG4
Ser S9.2%
UCU125
UCC9
UCA92
UCG2
AGU44
AGC4
AGA66
AGG0
Pro P3.6%
CCU78
CCC4
CCA54
CCG0
Thr T4.9%
ACU79
ACC8
ACA94
ACG3
Ala A4.8%
GCU109
GCC8
GCA57
GCG4
Tyr Y4.5%
UAU142
UAC24
His H2.1%
CAU63
CAC16
Gln Q2.1%
CAA75
CAG5
Asn N5.3%
AAU180
AAC19
Lys K2.2%
AAA71
AAG12
Asp D1.7%
GAU52
GAC11
Glu E2.1%
GAA73
GAG5
Cys C1.2%
UGU38
UGC5
Trp W2.7%
UGA94
UGG7
Arg R1.6%
CGU16
CGC1
CGA38
CGG4
Gly G6.0%
GGU62
GGC9
GGA128
GGG26
Stop 0.3%
UAA10
UAG1
Genome map
37 annotated features in NC_000857.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (22.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Ile | Transfer RNA | 1 | 67 | 67 bp | + | – |
| tRNA-Gln | Transfer RNA | 107 | 175 | 69 bp | − | – |
| tRNA-Met | Transfer RNA | 223 | 291 | 69 bp | + | – |
| ND2 | Protein-coding gene | 293 | 1,315 | 1,023 bp | + | 20.0% |
| tRNA-Trp | Transfer RNA | 1,322 | 1,389 | 68 bp | + | – |
| tRNA-Cys | Transfer RNA | 1,382 | 1,445 | 64 bp | − | – |
| tRNA-Tyr | Transfer RNA | 1,462 | 1,528 | 67 bp | − | – |
| COX1 | Protein-coding gene | 1,527 | 3,062 | 1,536 bp | + | 30.7% |
| tRNA-Leu (UUR) | Transfer RNA | 3,068 | 3,133 | 66 bp | + | – |
| COX2 | Protein-coding gene | 3,138 | 3,824 | 687 bp | + | 28.0% |
| tRNA-Lys | Transfer RNA | 3,833 | 3,903 | 71 bp | + | – |
| tRNA-Asp | Transfer RNA | 3,907 | 3,973 | 67 bp | + | – |
| ATP8 | Protein-coding gene | 3,974 | 4,135 | 162 bp | + | 22.2% |
| ATP6 | Protein-coding gene | 4,129 | 4,806 | 678 bp | + | 27.3% |
| COX3 | Protein-coding gene | 4,806 | 5,594 | 789 bp | + | 29.8% |
| tRNA-Gly | Transfer RNA | 5,601 | 5,665 | 65 bp | + | – |
| ND3 | Protein-coding gene | 5,666 | 6,019 | 354 bp | + | 20.3% |
| tRNA-Ala | Transfer RNA | 6,022 | 6,085 | 64 bp | + | – |
| tRNA-Arg | Transfer RNA | 6,096 | 6,159 | 64 bp | + | – |
| tRNA-Asn | Transfer RNA | 6,163 | 6,227 | 65 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 6,228 | 6,295 | 68 bp | + | – |
| tRNA-Glu | Transfer RNA | 6,296 | 6,363 | 68 bp | + | – |
| tRNA-Phe | Transfer RNA | 6,382 | 6,448 | 67 bp | − | – |
| ND5 | Protein-coding gene | 6,449 | 8,168 | 1,720 bp | − | 21.9% |
| tRNA-His | Transfer RNA | 8,187 | 8,253 | 67 bp | − | – |
| ND4 | Protein-coding gene | 8,260 | 9,600 | 1,341 bp | − | 21.5% |
| ND4L | Protein-coding gene | 9,600 | 9,890 | 291 bp | − | 18.2% |
| tRNA-Thr | Transfer RNA | 9,893 | 9,957 | 65 bp | + | – |
| tRNA-Pro | Transfer RNA | 9,958 | 10,023 | 66 bp | − | – |
| ND6 | Protein-coding gene | 10,026 | 10,550 | 525 bp | + | 18.1% |
| CYTB | Protein-coding gene | 10,550 | 11,686 | 1,137 bp | + | 26.7% |
| tRNA-Ser (UCN) | Transfer RNA | 11,685 | 11,751 | 67 bp | + | – |
| ND1 | Protein-coding gene | 11,767 | 12,706 | 940 bp | − | 23.6% |
| tRNA-Leu (CUN) | Transfer RNA | 12,716 | 12,781 | 66 bp | − | – |
| 16S rRNA | Ribosomal RNA | 12,782 | 14,116 | 1,335 bp | − | 18.3% |
| tRNA-Val | Transfer RNA | 14,117 | 14,188 | 72 bp | − | – |
| 12S rRNA | Ribosomal RNA | 14,189 | 14,976 | 788 bp | − | 22.3% |