MitoAge

Cercocebus torquatus

Red-capped mangabey

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Maximum lifespan
46 yr
AnAge record
mtDNA size
16,542 bp
RefSeq NC_023964.1
GC content
41.42%
Whole genome
Non-coding
1,192 bp
D-loop 1,066 bp

Where Red-capped mangabey sits among 2,335 species

Whole-genome GC content against maximum lifespan. Red-capped mangabey has the 189th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Red-capped mangabey
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,542 bp
GC skew (G − C) / (G + C)
−0.410
AT skew (A − T) / (A + T)
+0.110

Life history

Maximum lifespan
46 years
Adult weight
9.5 kg
Female sexual maturity
2.7 years
Gestation or incubation
167 days
Litter or clutch size
1
Litters per year
0.9

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02716)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,542 bp
Protein-coding11,361 bp
12S rRNA953 bp
16S rRNA1,563 bp
All tRNA1,501 bp
D-loop1,066 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp31.0%25.4%10.4%33.2%43.56%−0.524+0.098
ND2NADH dehydrogenase subunit 21,042 bp34.4%25.6%7.7%32.3%40.02%−0.616+0.146
COX1Cytochrome c oxidase subunit I1,569 bp27.8%29.6%15.4%27.2%42.58%−0.275−0.032
COX2Cytochrome c oxidase subunit II684 bp31.6%26.8%13.9%27.8%41.67%−0.333+0.083
ATP8ATP synthase F0 subunit 8201 bp40.3%22.4%4.5%32.8%37.31%−0.760+0.286
ATP6ATP synthase F0 subunit 6681 bp33.3%27.0%9.0%30.7%39.65%−0.548+0.105
COX3Cytochrome c oxidase subunit III784 bp27.6%28.2%13.8%30.5%44.26%−0.378−0.011
ND3NADH dehydrogenase subunit 3346 bp32.9%29.2%9.2%28.6%37.86%−0.511+0.060
ND4LNADH dehydrogenase subunit 4L297 bp29.3%29.3%11.8%29.6%41.41%−0.4310.000
ND4NADH dehydrogenase subunit 41,378 bp32.9%26.6%8.6%31.9%40.49%−0.573+0.105
ND5NADH dehydrogenase subunit 51,806 bp32.1%27.2%10.2%30.4%40.64%−0.496+0.082
ND6NADH dehydrogenase subunit 6525 bp41.5%19.0%6.1%33.3%39.43%−0.691+0.371
CYTBCytochrome b1,141 bp30.9%27.0%10.6%31.6%42.16%−0.497+0.067
12S rRNA12S ribosomal RNA953 bp33.8%22.2%18.5%25.5%43.97%−0.160+0.206
16S rRNA16S ribosomal RNA1,563 bp35.8%23.5%16.8%23.8%40.63%−0.172+0.207
D-loopControl region (D-loop)1,066 bp30.3%24.8%13.0%31.9%44.93%−0.420+0.101

Codon usage

Counts per codon, darker is more frequent

3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.7%
UUU84
UUC131
Leu L16.6%
UUA83
UUG12
CUU84
CUC126
CUA287
CUG38
Ile I8.8%
AUU156
AUC177
Met M6.4%
AUA209
AUG35
Val V3.6%
GUU46
GUC25
GUA54
GUG12
Ser S7.0%
UCU45
UCC74
UCA94
UCG4
AGU11
AGC39
Pro P5.4%
CCU38
CCC90
CCA74
CCG2
Thr T9.9%
ACU72
ACC139
ACA156
ACG10
Ala A6.1%
GCU45
GCC106
GCA78
GCG4
Tyr Y3.7%
UAU59
UAC80
His H2.7%
CAU34
CAC67
Gln Q2.6%
CAA92
CAG7
Asn N4.7%
AAU60
AAC118
Lys K2.4%
AAA86
AAG7
Asp D1.7%
GAU27
GAC36
Glu E2.2%
GAA68
GAG14
Cys C0.6%
UGU7
UGC14
Trp W2.7%
UGA91
UGG10
Arg R1.7%
CGU13
CGC15
CGA31
CGG4
Gly G5.6%
GGU41
GGC81
GGA71
GGG21
Stop 0.2%
UAA5
UAG1
AGA0
AGG1

Genome map

38 annotated features in NC_023964.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17272 bp+–
12S rRNARibosomal RNA731,025953 bp+44.0%
tRNA-ValTransfer RNA1,0261,09469 bp+–
16S rRNARibosomal RNA1,0952,6571,563 bp+40.6%
tRNA-Leu (UUR)Transfer RNA2,6592,73375 bp+–
ND1Protein-coding gene2,7363,690955 bp+43.6%
tRNA-IleTransfer RNA3,6913,75969 bp+–
tRNA-GlnTransfer RNA3,7573,82872 bp−–
tRNA-MetTransfer RNA3,8303,89768 bp+–
ND2Protein-coding gene3,8984,9391,042 bp+40.0%
tRNA-TrpTransfer RNA4,9405,00465 bp+–
tRNA-AlaTransfer RNA5,0125,08069 bp−–
tRNA-AsnTransfer RNA5,0825,15473 bp−–
tRNA-CysTransfer RNA5,1865,25469 bp−–
tRNA-TyrTransfer RNA5,2555,31965 bp−–
COX1Protein-coding gene5,3336,9011,569 bp+42.6%
tRNA-Ser (UCN)Transfer RNA6,8746,94269 bp−–
tRNA-AspTransfer RNA6,9467,01368 bp+–
COX2Protein-coding gene7,0157,698684 bp+41.7%
tRNA-LysTransfer RNA7,7457,81167 bp+–
ATP8Protein-coding gene7,8138,013201 bp+37.3%
ATP6Protein-coding gene7,9748,654681 bp+39.7%
COX3Protein-coding gene8,6549,437784 bp+44.3%
tRNA-GlyTransfer RNA9,4389,50568 bp+–
ND3Protein-coding gene9,5069,851346 bp+37.9%
tRNA-ArgTransfer RNA9,8529,91665 bp+–
ND4LProtein-coding gene9,91710,213297 bp+41.4%
ND4Protein-coding gene10,20711,5841,378 bp+40.5%
tRNA-HisTransfer RNA11,58511,65369 bp+–
tRNA-Ser (AGY)Transfer RNA11,65411,71259 bp+–
tRNA-Leu (CUN)Transfer RNA11,71311,78371 bp+–
ND5Protein-coding gene11,79013,5951,806 bp+40.6%
ND6Protein-coding gene13,59914,123525 bp−39.4%
tRNA-GluTransfer RNA14,12414,19269 bp+–
CYTBProtein-coding gene14,19715,3371,141 bp+42.2%
tRNA-ThrTransfer RNA15,33815,40265 bp+–
tRNA-ProTransfer RNA15,40915,47668 bp−–
D-loopControl region15,47716,5421,066 bp–44.9%

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