Ceryle rudis
Pied kingfisher
GC content
44.10%
Whole genome
Non-coding
1,885 bp
D-loop 1,874 bp
Where Pied kingfisher sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pied kingfisher has the 2,149th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome17,355 bp
- GC skew (G − C) / (G + C)
- −0.400
- AT skew (A − T) / (A + T)
- +0.148
Life history
- Maximum lifespan
- 3.9 years
- Adult weight
- 84.4 g
- Female sexual maturity
- 363 days
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00614)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,355 bp
Protein-coding11,375 bp
12S rRNA971 bp
16S rRNA1,585 bp
All tRNA1,551 bp
D-loop1,874 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 44.58% | −0.440 | +0.030 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,039 bp | 43.02% | −0.539 | +0.189 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.84% | −0.316 | +0.043 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 45.32% | −0.400 | +0.171 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.69% | −0.785 | +0.243 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.44% | −0.579 | +0.111 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.43% | −0.407 | +0.114 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 46.44% | −0.509 | +0.085 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.12% | −0.433 | +0.055 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,377 bp | 46.99% | −0.570 | +0.156 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,815 bp | 45.18% | −0.507 | +0.158 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.598 | +0.590 | |||||
| CYTBCytochrome b | 1,143 bp | 46.28% | −0.490 | +0.059 | |||||
| 12S rRNA12S ribosomal RNA | 971 bp | 47.99% | −0.159 | +0.232 | |||||
| 16S rRNA16S ribosomal RNA | 1,585 bp | 44.10% | −0.179 | +0.230 | |||||
| D-loopControl region (D-loop) | 1,874 bp | 34.79% | −0.331 | +0.111 |
Codon usage
Counts per codon, darker is more frequent3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU60
UUC163
Leu L17.1%
UUA76
UUG18
CUU58
CUC148
CUA328
CUG20
Ile I7.8%
AUU91
AUC205
Met M4.8%
AUA143
AUG40
Val V4.3%
GUU32
GUC48
GUA64
GUG18
Ser S7.5%
UCU32
UCC102
UCA93
UCG5
AGU7
AGC47
Pro P6.0%
CCU33
CCC74
CCA115
CCG4
Thr T9.4%
ACU47
ACC146
ACA154
ACG9
Ala A7.5%
GCU49
GCC139
GCA94
GCG3
Tyr Y2.9%
UAU20
UAC89
His H2.8%
CAU21
CAC86
Gln Q2.5%
CAA87
CAG9
Asn N3.7%
AAU24
AAC116
Lys K2.3%
AAA81
AAG5
Asp D1.7%
GAU20
GAC44
Glu E2.5%
GAA84
GAG10
Cys C0.8%
UGU7
UGC24
Trp W2.8%
UGA95
UGG11
Arg R1.8%
CGU6
CGC22
CGA37
CGG5
Gly G5.7%
GGU29
GGC80
GGA84
GGG25
Stop 0.3%
UAA8
UAG1
AGA0
AGG2
Genome map
38 annotated features in NC_024280.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 67 | 67 bp | + | – |
| 12S rRNA | Ribosomal RNA | 68 | 1,038 | 971 bp | + | 48.0% |
| tRNA-Val | Transfer RNA | 1,039 | 1,108 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,109 | 2,693 | 1,585 bp | + | 44.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,695 | 2,768 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,784 | 3,761 | 978 bp | + | 44.6% |
| tRNA-Ile | Transfer RNA | 3,759 | 3,832 | 74 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,839 | 3,909 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,909 | 3,978 | 70 bp | + | – |
| ND2 | Protein-coding gene | 3,979 | 5,017 | 1,039 bp | + | 43.0% |
| tRNA-Trp | Transfer RNA | 5,018 | 5,092 | 75 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,094 | 5,162 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,177 | 5,249 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,252 | 5,318 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,318 | 5,388 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,390 | 6,940 | 1,551 bp | + | 45.8% |
| tRNA-Ser (UCN) | Transfer RNA | 6,932 | 7,005 | 74 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,008 | 7,076 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,078 | 7,761 | 684 bp | + | 45.3% |
| tRNA-Lys | Transfer RNA | 7,762 | 7,835 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,837 | 8,004 | 168 bp | + | 38.7% |
| ATP6 | Protein-coding gene | 7,995 | 8,678 | 684 bp | + | 44.4% |
| COX3 | Protein-coding gene | 8,678 | 9,461 | 784 bp | + | 46.4% |
| tRNA-Gly | Transfer RNA | 9,462 | 9,530 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,531 | 9,882 | 352 bp | + | 46.4% |
| tRNA-Arg | Transfer RNA | 9,885 | 9,952 | 68 bp | + | – |
| ND4L | Protein-coding gene | 9,954 | 10,250 | 297 bp | + | 45.1% |
| ND4 | Protein-coding gene | 10,244 | 11,620 | 1,377 bp | + | 47.0% |
| tRNA-His | Transfer RNA | 11,622 | 11,691 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,692 | 11,756 | 65 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,757 | 11,827 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,828 | 13,642 | 1,815 bp | + | 45.2% |
| CYTB | Protein-coding gene | 13,657 | 14,799 | 1,143 bp | + | 46.3% |
| tRNA-Thr | Transfer RNA | 14,802 | 14,870 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,875 | 14,946 | 72 bp | − | – |
| ND6 | Protein-coding gene | 14,956 | 15,477 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 15,481 | 15,551 | 71 bp | − | – |
| D-loop | Control region | 15,482 | 17,355 | 1,874 bp | – | 34.8% |