Cheilinus undulatus
Humphead wrasse
GC content
47.72%
Whole genome
Non-coding
973 bp
D-loop 903 bp
Where Humphead wrasse sits among 2,335 species
Whole-genome GC content against maximum lifespan. Humphead wrasse has the 395th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,613 bp
- GC skew (G − C) / (G + C)
- −0.296
- AT skew (A − T) / (A + T)
- +0.045
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,613 bp
Protein-coding11,428 bp
12S rRNA956 bp
16S rRNA1,702 bp
All tRNA1,563 bp
D-loop903 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.13% | −0.370 | −0.065 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 49.09% | −0.501 | +0.075 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 47.56% | −0.221 | −0.081 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.57% | −0.253 | +0.039 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.02% | −0.494 | +0.146 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 48.90% | −0.509 | −0.043 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.41% | −0.284 | −0.062 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 51.71% | −0.418 | −0.259 | |||||
| ND4LNADH dehydrogenase subunit 4L | 296 bp | 49.32% | −0.411 | −0.067 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 46.31% | −0.372 | +0.003 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.11% | −0.399 | +0.074 | |||||
| ND6NADH dehydrogenase subunit 6 | 531 bp | 48.96% | −0.369 | +0.439 | |||||
| CYTBCytochrome b | 1,141 bp | 48.90% | −0.348 | −0.091 | |||||
| 12S rRNA12S ribosomal RNA | 956 bp | 49.16% | −0.111 | +0.148 | |||||
| 16S rRNA16S ribosomal RNA | 1,702 bp | 47.12% | −0.152 | +0.227 | |||||
| D-loopControl region (D-loop) | 903 bp | 47.95% | −0.192 | +0.055 |
Codon usage
Counts per codon, darker is more frequent3,812 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU87
UUC146
Leu L17.5%
UUA58
UUG20
CUU173
CUC189
CUA181
CUG45
Ile I6.7%
AUU105
AUC151
Met M3.9%
AUA96
AUG52
Val V5.9%
GUU57
GUC76
GUA66
GUG25
Ser S6.7%
UCU46
UCC68
UCA69
UCG13
AGU10
AGC50
Pro P5.7%
CCU44
CCC97
CCA68
CCG10
Thr T8.2%
ACU59
ACC123
ACA107
ACG22
Ala A9.0%
GCU73
GCC138
GCA114
GCG18
Tyr Y2.9%
UAU28
UAC84
His H2.8%
CAU22
CAC83
Gln Q2.8%
CAA81
CAG24
Asn N3.0%
AAU28
AAC85
Lys K2.0%
AAA66
AAG11
Asp D2.0%
GAU17
GAC58
Glu E2.7%
GAA76
GAG28
Cys C0.7%
UGU6
UGC21
Trp W3.1%
UGA98
UGG22
Arg R2.0%
CGU10
CGC9
CGA45
CGG12
Gly G6.2%
GGU30
GGC96
GGA85
GGG26
Stop 0.1%
UAA4
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_013842.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,024 | 956 bp | + | 49.2% |
| tRNA-Val | Transfer RNA | 1,025 | 1,096 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,097 | 2,798 | 1,702 bp | + | 47.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,799 | 2,871 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,874 | 3,848 | 975 bp | + | 49.1% |
| tRNA-Ile | Transfer RNA | 3,853 | 3,922 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,924 | 3,994 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,994 | 4,063 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,064 | 5,108 | 1,045 bp | + | 49.1% |
| tRNA-Trp | Transfer RNA | 5,109 | 5,179 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,182 | 5,250 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,253 | 5,325 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,366 | 5,433 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,434 | 5,504 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,506 | 7,065 | 1,560 bp | + | 47.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,057 | 7,127 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,131 | 7,203 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,212 | 7,902 | 691 bp | + | 44.6% |
| tRNA-Lys | Transfer RNA | 7,903 | 7,979 | 77 bp | + | – |
| ATP8 | Protein-coding gene | 7,981 | 8,148 | 168 bp | + | 47.0% |
| ATP6 | Protein-coding gene | 8,139 | 8,821 | 683 bp | + | 48.9% |
| COX3 | Protein-coding gene | 8,822 | 9,606 | 785 bp | + | 48.4% |
| tRNA-Gly | Transfer RNA | 9,607 | 9,678 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,680 | 10,031 | 352 bp | + | 51.7% |
| tRNA-Arg | Transfer RNA | 10,032 | 10,100 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,101 | 10,396 | 296 bp | + | 49.3% |
| ND4 | Protein-coding gene | 10,391 | 11,772 | 1,382 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,773 | 11,841 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,842 | 11,912 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,913 | 11,985 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,986 | 13,824 | 1,839 bp | + | 46.1% |
| ND6 | Protein-coding gene | 13,821 | 14,351 | 531 bp | − | 49.0% |
| tRNA-Glu | Transfer RNA | 14,352 | 14,420 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,426 | 15,566 | 1,141 bp | + | 48.9% |
| tRNA-Thr | Transfer RNA | 15,567 | 15,639 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,639 | 15,710 | 72 bp | − | – |
| D-loop | Control region | 15,711 | 16,613 | 903 bp | – | 48.0% |