Cherax quadricarinatus
GC content
34.58%
Whole genome
Non-coding
1,214 bp
D-loop 941 bp
Where Cherax quadricarinatus sits among 2,335 species
Whole-genome GC content against maximum lifespan. Cherax quadricarinatus has the 2,075th longest lifespan of them.
- This species
- All other species
Base composition
Whole genome15,869 bp
- GC skew (G − C) / (G + C)
- −0.353
- AT skew (A − T) / (A + T)
- +0.017
About this record
- Lifespan source
- SeaLifeBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,869 bp
Protein-coding11,117 bp
12S rRNA817 bp
16S rRNA1,372 bp
All tRNA1,439 bp
D-loop941 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 918 bp | 32.68% | −0.413 | +0.249 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,005 bp | 36.22% | −0.478 | −0.195 | |||||
| COX1Cytochrome c oxidase subunit I | 1,534 bp | 41.40% | −0.203 | −0.079 | |||||
| COX2Cytochrome c oxidase subunit II | 678 bp | 36.43% | −0.287 | −0.002 | |||||
| ATP8ATP synthase F0 subunit 8 | 159 bp | 31.45% | −0.480 | −0.009 | |||||
| ATP6ATP synthase F0 subunit 6 | 675 bp | 38.22% | −0.326 | −0.165 | |||||
| COX3Cytochrome c oxidase subunit III | 789 bp | 38.40% | −0.208 | −0.115 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 36.36% | −0.297 | −0.152 | |||||
| ND4LNADH dehydrogenase subunit 4L | 300 bp | 33.67% | −0.604 | +0.347 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,344 bp | 33.41% | −0.501 | +0.247 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,728 bp | 33.45% | −0.394 | +0.233 | |||||
| ND6NADH dehydrogenase subunit 6 | 515 bp | 33.98% | −0.566 | −0.212 | |||||
| CYTBCytochrome b | 1,135 bp | 40.79% | −0.300 | −0.188 | |||||
| 12S rRNA12S ribosomal RNA | 817 bp | 29.62% | −0.421 | −0.002 | |||||
| 16S rRNA16S ribosomal RNA | 1,372 bp | 31.20% | −0.393 | +0.030 | |||||
| D-loopControl region (D-loop) | 941 bp | 30.07% | −0.293 | −0.021 |
Codon usage
Counts per codon, darker is more frequent3,709 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F8.7%
UUU211
UUC112
Leu L16.2%
UUA228
UUG95
CUU108
CUC56
CUA93
CUG20
Ile I8.4%
AUU214
AUC98
Met M4.8%
AUA123
AUG55
Val V6.6%
GUU91
GUC30
GUA72
GUG50
Ser S10.9%
UCU84
UCC64
UCA91
UCG18
AGU26
AGC5
AGA63
AGG52
Pro P4.0%
CCU68
CCC28
CCA39
CCG14
Thr T5.2%
ACU71
ACC51
ACA65
ACG7
Ala A5.3%
GCU78
GCC53
GCA57
GCG9
Tyr Y3.7%
UAU95
UAC44
His H2.2%
CAU45
CAC38
Gln Q1.7%
CAA47
CAG17
Asn N3.4%
AAU82
AAC43
Lys K2.4%
AAA71
AAG18
Asp D1.9%
GAU41
GAC31
Glu E2.2%
GAA52
GAG31
Cys C1.2%
UGU41
UGC3
Trp W2.6%
UGA69
UGG28
Arg R1.5%
CGU10
CGC5
CGA33
CGG9
Gly G6.7%
GGU57
GGC29
GGA88
GGG74
Stop 0.2%
UAA7
UAG2
Genome map
38 annotated features in NC_022937.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (34.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| COX1 | Protein-coding gene | 1 | 1,534 | 1,534 bp | + | 41.4% |
| tRNA-Leu (UUR) | Transfer RNA | 1,535 | 1,600 | 66 bp | + | – |
| COX2 | Protein-coding gene | 1,602 | 2,279 | 678 bp | + | 36.4% |
| tRNA-Lys | Transfer RNA | 2,289 | 2,353 | 65 bp | + | – |
| tRNA-Asp | Transfer RNA | 2,354 | 2,419 | 66 bp | + | – |
| ATP8 | Protein-coding gene | 2,421 | 2,579 | 159 bp | + | 31.5% |
| ATP6 | Protein-coding gene | 2,573 | 3,247 | 675 bp | + | 38.2% |
| COX3 | Protein-coding gene | 3,247 | 4,035 | 789 bp | + | 38.4% |
| tRNA-Gly | Transfer RNA | 4,033 | 4,096 | 64 bp | + | – |
| ND3 | Protein-coding gene | 4,098 | 4,449 | 352 bp | + | 36.4% |
| tRNA-Ala | Transfer RNA | 4,449 | 4,509 | 61 bp | + | – |
| tRNA-Arg | Transfer RNA | 4,510 | 4,571 | 62 bp | + | – |
| tRNA-Asn | Transfer RNA | 4,575 | 4,639 | 65 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 4,640 | 4,705 | 66 bp | + | – |
| tRNA-Glu | Transfer RNA | 4,705 | 4,770 | 66 bp | + | – |
| tRNA-Phe | Transfer RNA | 4,772 | 4,835 | 64 bp | − | – |
| ND5 | Protein-coding gene | 4,842 | 6,569 | 1,728 bp | − | 33.5% |
| tRNA-His | Transfer RNA | 6,569 | 6,634 | 66 bp | − | – |
| tRNA-Thr | Transfer RNA | 6,641 | 6,705 | 65 bp | + | – |
| ND6 | Protein-coding gene | 6,728 | 7,242 | 515 bp | + | 34.0% |
| tRNA-Pro | Transfer RNA | 7,243 | 7,306 | 64 bp | + | – |
| 16S rRNA | Ribosomal RNA | 7,251 | 8,622 | 1,372 bp | − | 31.2% |
| tRNA-Val | Transfer RNA | 8,600 | 8,667 | 68 bp | − | – |
| D-loop | Control region | 8,688 | 9,628 | 941 bp | – | 30.1% |
| tRNA-Gln | Transfer RNA | 9,593 | 9,661 | 69 bp | − | – |
| tRNA-Met | Transfer RNA | 9,666 | 9,732 | 67 bp | + | – |
| ND2 | Protein-coding gene | 9,731 | 10,735 | 1,005 bp | + | 36.2% |
| tRNA-Trp | Transfer RNA | 10,733 | 10,802 | 70 bp | + | – |
| tRNA-Tyr | Transfer RNA | 10,811 | 10,875 | 65 bp | − | – |
| ND4 | Protein-coding gene | 10,877 | 12,220 | 1,344 bp | − | 33.4% |
| ND4L | Protein-coding gene | 12,214 | 12,513 | 300 bp | − | 33.7% |
| CYTB | Protein-coding gene | 12,564 | 13,698 | 1,135 bp | + | 40.8% |
| tRNA-Ser (UCN) | Transfer RNA | 13,698 | 13,762 | 65 bp | + | – |
| ND1 | Protein-coding gene | 13,782 | 14,699 | 918 bp | − | 32.7% |
| tRNA-Leu (CUN) | Transfer RNA | 14,722 | 14,790 | 69 bp | − | – |
| 12S rRNA | Ribosomal RNA | 14,792 | 15,608 | 817 bp | − | 29.6% |
| tRNA-Ile | Transfer RNA | 15,726 | 15,790 | 65 bp | + | – |
| tRNA-Cys | Transfer RNA | 15,805 | 15,866 | 62 bp | − | – |