MitoAge

Chinchilla lanigera

Long-tailed chinchilla

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Maximum lifespan
17.2 yr
AnAge record
mtDNA size
16,580 bp
RefSeq NC_021386.1
GC content
40.88%
Whole genome
Non-coding
1,216 bp
Including the D-loop

Where Long-tailed chinchilla sits among 2,335 species

Whole-genome GC content against maximum lifespan. Long-tailed chinchilla has the 1,085th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Long-tailed chinchilla
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,580 bp
GC skew (G − C) / (G + C)
−0.359
AT skew (A − T) / (A + T)
+0.128

Life history

Maximum lifespan
17.2 years
Adult weight
642.5 g
Birth weight
35 g
Basal metabolic rate
1.31 W
Body temperature
34.7 °C
Female sexual maturity
240 days
Male sexual maturity
240 days
Gestation or incubation
111 days
Litter or clutch size
2
Litters per year
2

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02865)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,580 bp
Protein-coding11,351 bp
12S rRNA954 bp
16S rRNA1,555 bp
All tRNA1,504 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1958 bp32.0%25.7%10.4%31.8%42.28%−0.506+0.110
ND2NADH dehydrogenase subunit 21,044 bp33.8%25.7%9.4%31.1%40.52%−0.537+0.137
COX1Cytochrome c oxidase subunit I1,545 bp28.1%29.6%17.2%25.2%42.33%−0.190−0.026
COX2Cytochrome c oxidase subunit II684 bp33.8%25.6%13.2%27.5%40.64%−0.353+0.138
ATP8ATP synthase F0 subunit 8204 bp40.7%24.0%6.4%28.9%35.29%−0.639+0.258
ATP6ATP synthase F0 subunit 6681 bp30.5%25.8%11.7%31.9%43.61%−0.461+0.083
COX3Cytochrome c oxidase subunit III784 bp27.9%27.4%14.9%29.7%44.64%−0.331+0.009
ND3NADH dehydrogenase subunit 3346 bp31.2%26.3%11.8%30.6%42.49%−0.442+0.085
ND4LNADH dehydrogenase subunit 4L297 bp30.3%30.0%11.4%28.3%39.73%−0.424+0.006
ND4NADH dehydrogenase subunit 41,378 bp33.0%26.6%10.3%30.1%40.42%−0.490+0.108
ND5NADH dehydrogenase subunit 51,824 bp33.7%26.6%10.0%29.7%39.69%−0.494+0.118
ND6NADH dehydrogenase subunit 6528 bp41.5%19.9%9.5%29.2%38.64%−0.510+0.352
CYTBCytochrome b1,140 bp29.9%26.7%13.2%30.2%43.42%−0.390+0.057
12S rRNA12S ribosomal RNA954 bp37.1%21.8%17.2%23.9%41.09%−0.163+0.260
16S rRNA16S ribosomal RNA1,555 bp38.0%22.8%17.0%22.1%39.16%−0.130+0.249

Codon usage

Counts per codon, darker is more frequent

3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU72
UUC163
Leu L16.4%
UUA109
UUG32
CUU66
CUC112
CUA266
CUG39
Ile I9.2%
AUU123
AUC225
Met M5.7%
AUA184
AUG33
Val V4.0%
GUU23
GUC46
GUA69
GUG14
Ser S8.0%
UCU40
UCC65
UCA140
UCG6
AGU16
AGC36
Pro P5.3%
CCU58
CCC54
CCA78
CCG11
Thr T8.4%
ACU48
ACC117
ACA135
ACG19
Ala A6.3%
GCU50
GCC83
GCA93
GCG13
Tyr Y3.4%
UAU47
UAC83
His H2.7%
CAU24
CAC79
Gln Q2.4%
CAA83
CAG7
Asn N4.5%
AAU41
AAC132
Lys K2.6%
AAA91
AAG9
Asp D1.7%
GAU23
GAC40
Glu E2.5%
GAA75
GAG19
Cys C0.7%
UGU10
UGC16
Trp W2.8%
UGA92
UGG13
Arg R1.7%
CGU4
CGC8
CGA48
CGG3
Gly G5.5%
GGU20
GGC47
GGA107
GGG35
Stop 0.2%
UAA6
UAG1
AGA2
AGG0

Genome map

37 annotated features in NC_021386.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16666 bp+–
12S rRNARibosomal RNA671,020954 bp+41.1%
tRNA-ValTransfer RNA1,0211,08767 bp+–
16S rRNARibosomal RNA1,0882,6421,555 bp+39.2%
tRNA-Leu (UUR)Transfer RNA2,6432,71876 bp+–
ND1Protein-coding gene2,7223,679958 bp+42.3%
tRNA-IleTransfer RNA3,6803,74768 bp+–
tRNA-GlnTransfer RNA3,7453,81571 bp−–
tRNA-MetTransfer RNA3,8183,88669 bp+–
ND2Protein-coding gene3,8874,9301,044 bp+40.5%
tRNA-TrpTransfer RNA4,9425,01069 bp+–
tRNA-AlaTransfer RNA5,0145,08370 bp−–
tRNA-AsnTransfer RNA5,0855,15773 bp−–
tRNA-CysTransfer RNA5,1915,25767 bp−–
tRNA-TyrTransfer RNA5,2595,32567 bp−–
COX1Protein-coding gene5,3316,8751,545 bp+42.3%
tRNA-Ser (UCN)Transfer RNA6,8766,94469 bp−–
tRNA-AspTransfer RNA6,9507,01768 bp+–
COX2Protein-coding gene7,0187,701684 bp+40.6%
tRNA-LysTransfer RNA7,7047,77067 bp+–
ATP8Protein-coding gene7,7717,974204 bp+35.3%
ATP6Protein-coding gene7,9328,612681 bp+43.6%
COX3Protein-coding gene8,6129,395784 bp+44.6%
tRNA-GlyTransfer RNA9,3969,46469 bp+–
ND3Protein-coding gene9,4659,810346 bp+42.5%
tRNA-ArgTransfer RNA9,8129,87968 bp+–
ND4LProtein-coding gene9,88110,177297 bp+39.7%
ND4Protein-coding gene10,17111,5481,378 bp+40.4%
tRNA-HisTransfer RNA11,54911,61769 bp+–
tRNA-Ser (AGY)Transfer RNA11,62111,68161 bp+–
tRNA-Leu (CUN)Transfer RNA11,68111,75070 bp+–
ND5Protein-coding gene11,75113,5741,824 bp+39.7%
ND6Protein-coding gene13,56414,091528 bp−38.6%
tRNA-GluTransfer RNA14,09214,16069 bp−–
CYTBProtein-coding gene14,16315,3021,140 bp+43.4%
tRNA-ThrTransfer RNA15,30315,37068 bp+–
tRNA-ProTransfer RNA15,37415,44067 bp−–

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