MitoAge

Chiropodomys gliroides

Pencil-tailed tree mouse

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Maximum lifespan
3.6 yr
AnAge record
mtDNA size
16,262 bp
RefSeq NC_049121.1
GC content
36.70%
Whole genome
Non-coding
927 bp
D-loop 864 bp

Where Pencil-tailed tree mouse sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pencil-tailed tree mouse has the 2,161st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Pencil-tailed tree mouse
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,262 bp
GC skew (G − C) / (G + C)
−0.343
AT skew (A − T) / (A + T)
+0.106

Life history

Maximum lifespan
3.6 years
Adult weight
29 g
Birth weight
2.8 g
Female sexual maturity
101 days
Gestation or incubation
20 days
Litter or clutch size
2.2
Postnatal growth rate
0.0388 per day

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03026)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,262 bp
Protein-coding11,332 bp
12S rRNA953 bp
16S rRNA1,559 bp
All tRNA1,494 bp
D-loop864 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp33.0%28.5%11.3%27.2%38.53%−0.413+0.073
ND2NADH dehydrogenase subunit 21,036 bp38.0%27.6%6.6%27.8%34.36%−0.618+0.159
COX1Cytochrome c oxidase subunit I1,545 bp29.7%31.1%15.8%23.4%39.22%−0.195−0.022
COX2Cytochrome c oxidase subunit II684 bp34.2%29.1%13.2%23.5%36.70%−0.283+0.081
ATP8ATP synthase F0 subunit 8204 bp38.2%30.4%4.4%27.0%31.37%−0.719+0.114
ATP6ATP synthase F0 subunit 6681 bp33.9%30.2%10.0%25.8%35.83%−0.443+0.057
COX3Cytochrome c oxidase subunit III784 bp30.2%30.0%13.8%26.0%39.80%−0.308+0.004
ND3NADH dehydrogenase subunit 3348 bp31.9%33.3%10.1%24.7%34.77%−0.421−0.022
ND4LNADH dehydrogenase subunit 4L297 bp30.6%32.7%9.4%27.3%36.70%−0.486−0.032
ND4NADH dehydrogenase subunit 41,378 bp35.1%28.7%8.9%27.3%36.14%−0.510+0.100
ND5NADH dehydrogenase subunit 51,821 bp34.3%29.0%9.3%27.3%36.68%−0.491+0.082
ND6NADH dehydrogenase subunit 6519 bp45.3%21.2%6.0%27.6%33.53%−0.644+0.362
CYTBCytochrome b1,144 bp31.6%27.9%12.2%28.2%40.47%−0.395+0.063
12S rRNA12S ribosomal RNA953 bp38.2%25.4%16.6%19.8%36.41%−0.089+0.201
16S rRNA16S ribosomal RNA1,559 bp40.7%24.2%16.2%19.0%35.15%−0.080+0.254
D-loopControl region (D-loop)864 bp34.1%29.3%12.4%24.2%36.57%−0.323+0.077

Codon usage

Counts per codon, darker is more frequent

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%
UUU116
UUC126
Leu L15.4%
UUA137
UUG13
CUU94
CUC84
CUA235
CUG21
Ile I10.3%
AUU230
AUC162
Met M6.2%
AUA209
AUG26
Val V4.0%
GUU35
GUC18
GUA90
GUG7
Ser S7.9%
UCU42
UCC64
UCA136
UCG2
AGU13
AGC43
Pro P5.2%
CCU33
CCC38
CCA124
CCG1
Thr T8.3%
ACU52
ACC87
ACA171
ACG4
Ala A6.0%
GCU44
GCC95
GCA86
GCG4
Tyr Y3.5%
UAU77
UAC54
His H2.5%
CAU32
CAC64
Gln Q2.2%
CAA81
CAG2
Asn N4.4%
AAU66
AAC100
Lys K2.7%
AAA96
AAG5
Asp D1.8%
GAU28
GAC42
Glu E2.4%
GAA82
GAG10
Cys C0.8%
UGU15
UGC15
Trp W2.7%
UGA98
UGG5
Arg R1.7%
CGU5
CGC13
CGA43
CGG3
Gly G5.6%
GGU34
GGC40
GGA123
GGG14
Stop 0.2%
UAA8
UAG0
AGA0
AGG0

Genome map

38 annotated features in NC_049121.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (36.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA701,022953 bp+36.4%
tRNA-ValTransfer RNA1,0231,09068 bp+–
16S rRNARibosomal RNA1,0952,6531,559 bp+35.2%
tRNA-Leu (UUR)Transfer RNA2,6542,72875 bp+–
ND1Protein-coding gene2,7293,683955 bp+38.5%
tRNA-IleTransfer RNA3,6843,75269 bp+–
tRNA-GlnTransfer RNA3,7503,82071 bp−–
tRNA-MetTransfer RNA3,8233,89169 bp+–
ND2Protein-coding gene3,8924,9271,036 bp+34.4%
tRNA-TrpTransfer RNA4,9284,99467 bp+–
tRNA-AlaTransfer RNA4,9965,06469 bp−–
tRNA-AsnTransfer RNA5,0675,13771 bp−–
tRNA-CysTransfer RNA5,1705,23566 bp−–
tRNA-TyrTransfer RNA5,2385,30467 bp−–
COX1Protein-coding gene5,3066,8501,545 bp+39.2%
tRNA-Ser (UCN)Transfer RNA6,8486,91669 bp−–
tRNA-AspTransfer RNA6,9206,98768 bp+–
COX2Protein-coding gene6,9897,672684 bp+36.7%
tRNA-LysTransfer RNA7,6767,74065 bp+–
ATP8Protein-coding gene7,7427,945204 bp+31.4%
ATP6Protein-coding gene7,9038,583681 bp+35.8%
COX3Protein-coding gene8,5869,369784 bp+39.8%
tRNA-GlyTransfer RNA9,3709,43768 bp+–
ND3Protein-coding gene9,4389,785348 bp+34.8%
tRNA-ArgTransfer RNA9,7879,85468 bp+–
ND4LProtein-coding gene9,85510,151297 bp+36.7%
ND4Protein-coding gene10,14511,5221,378 bp+36.1%
tRNA-HisTransfer RNA11,52311,59169 bp+–
tRNA-Ser (AGY)Transfer RNA11,59611,65156 bp+–
tRNA-Leu (CUN)Transfer RNA11,65111,72171 bp+–
ND5Protein-coding gene11,72213,5421,821 bp+36.7%
ND6Protein-coding gene13,52914,047519 bp−33.5%
tRNA-GluTransfer RNA14,04814,11669 bp−–
CYTBProtein-coding gene14,11915,2621,144 bp+40.5%
tRNA-ThrTransfer RNA15,26315,33068 bp+–
tRNA-ProTransfer RNA15,33215,39867 bp−–
D-loopControl region15,39916,262864 bp–36.6%

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