Chroicocephalus ridibundus

Black-headed gull

Maximum lifespan

32.9 yr

AnAge record

mtDNA size

16,807 bp

RefSeq NC_025649.1

GC content

45.22%

Whole genome

Non-coding

1,343 bp

D-loop 1,268 bp

Where Black-headed gull sits among 2,335 species

Whole-genome GC content against maximum lifespan. Black-headed gull has the 373rd longest lifespan of them.

This species
Other birds
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,807 bp

GC skew (G − C) / (G + C): −0.374
AT skew (A − T) / (A + T): +0.125

Life history

Maximum lifespan: 32.9 years
Adult weight: 306 g
Female sexual maturity: 2 years
Male sexual maturity: 2 years
Gestation or incubation: 22 days
Litter or clutch size: 3
Postnatal growth rate: 0.248 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00457)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,807 bp

Protein-coding11,370 bp

12S rRNA965 bp

16S rRNA1,604 bp

All tRNA1,547 bp

D-loop1,268 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Chroicocephalus ridibundus genes

ND1NADH dehydrogenase subunit 1	978 bp	26.3%	27.4%	14.1%	32.2%	46.32%	−0.391	−0.021
ND2NADH dehydrogenase subunit 2	1,039 bp	32.2%	24.0%	10.7%	33.1%	43.79%	−0.512	+0.147
COX1Cytochrome c oxidase subunit I	1,551 bp	27.5%	25.9%	16.1%	30.5%	46.62%	−0.308	+0.031
COX2Cytochrome c oxidase subunit II	684 bp	29.4%	24.0%	15.1%	31.6%	46.64%	−0.354	+0.101
ATP8ATP synthase F0 subunit 8	168 bp	34.5%	23.2%	6.0%	36.3%	42.26%	−0.718	+0.196
ATP6ATP synthase F0 subunit 6	684 bp	28.9%	23.4%	10.1%	37.6%	47.66%	−0.577	+0.106
COX3Cytochrome c oxidase subunit III	784 bp	28.1%	25.5%	16.6%	29.8%	46.43%	−0.286	+0.048
ND3NADH dehydrogenase subunit 3	345 bp	27.2%	27.2%	12.5%	33.0%	45.51%	−0.452	0.000
ND4LNADH dehydrogenase subunit 4L	297 bp	29.0%	24.6%	14.5%	32.0%	46.47%	−0.377	+0.082
ND4NADH dehydrogenase subunit 4	1,378 bp	30.9%	23.2%	10.4%	35.4%	45.86%	−0.544	+0.142
ND5NADH dehydrogenase subunit 5	1,815 bp	31.5%	23.9%	11.2%	33.4%	44.57%	−0.498	+0.137
ND6NADH dehydrogenase subunit 6	522 bp	42.3%	10.9%	10.5%	36.2%	46.74%	−0.549	+0.590
CYTBCytochrome b	1,143 bp	29.3%	24.8%	12.3%	33.5%	45.84%	−0.462	+0.082
12S rRNA12S ribosomal RNA	965 bp	30.9%	19.8%	21.2%	28.1%	49.33%	−0.139	+0.219
16S rRNA16S ribosomal RNA	1,604 bp	32.9%	22.0%	19.0%	26.1%	45.08%	−0.156	+0.199
D-loopControl region (D-loop)	1,268 bp	32.5%	27.1%	13.6%	26.8%	40.46%	−0.326	+0.091

Codon usage

Counts per codon, darker is more frequent

Gene

3,795 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU56

UUC167

Leu L17.5%

UUA75

UUG23

CUU63

CUC156

CUA305

CUG41

Ile I7.6%

AUU87

AUC203

Met M4.5%

AUA141

AUG29

Val V4.6%

GUU36

GUC49

GUA66

GUG23

Ser S7.5%

UCU34

UCC85

UCA98

UCG9

AGU6

AGC51

Pro P5.9%

CCU36

CCC80

CCA99

CCG8

Thr T9.2%

ACU59

ACC149

ACA135

ACG7

Ala A7.6%

GCU63

GCC118

GCA104

GCG5

Tyr Y2.9%

UAU31

UAC80

His H2.9%

CAU26

CAC85

Gln Q2.5%

CAA86

CAG10

Asn N3.4%

AAU18

AAC110

Lys K2.3%

AAA77

AAG9

Asp D1.6%

GAU16

GAC46

Glu E2.5%

GAA83

GAG11

Cys C0.7%

UGU11

UGC17

Trp W2.8%

UGA96

UGG11

Arg R1.9%

CGU11

CGC17

CGA37

CGG7

Gly G5.9%

GGU31

GGC72

GGA78

GGG43

Stop 0.3%

UAA6

UAG1

AGA1

AGG2

Genome map

38 annotated features in NC_025649.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Chroicocephalus ridibundus (NC_025649.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	71	71 bp	+	–
12S rRNA	Ribosomal RNA	72	1,036	965 bp	+	49.3%
tRNA-Val	Transfer RNA	1,036	1,107	72 bp	+	–
16S rRNA	Ribosomal RNA	1,108	2,711	1,604 bp	+	45.1%
tRNA-Leu (UUR)	Transfer RNA	2,702	2,775	74 bp	+	–
ND1	Protein-coding gene	2,779	3,756	978 bp	+	46.3%
tRNA-Ile	Transfer RNA	3,755	3,826	72 bp	+	–
tRNA-Gln	Transfer RNA	3,836	3,906	71 bp	−	–
tRNA-Met	Transfer RNA	3,906	3,974	69 bp	+	–
ND2	Protein-coding gene	3,975	5,013	1,039 bp	+	43.8%
tRNA-Trp	Transfer RNA	5,014	5,085	72 bp	+	–
tRNA-Ala	Transfer RNA	5,087	5,155	69 bp	−	–
tRNA-Asn	Transfer RNA	5,158	5,230	73 bp	−	–
tRNA-Cys	Transfer RNA	5,233	5,299	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,299	5,369	71 bp	−	–
COX1	Protein-coding gene	5,371	6,921	1,551 bp	+	46.6%
tRNA-Ser (UCN)	Transfer RNA	6,913	6,986	74 bp	−	–
tRNA-Asp	Transfer RNA	6,989	7,057	69 bp	+	–
COX2	Protein-coding gene	7,059	7,742	684 bp	+	46.6%
tRNA-Lys	Transfer RNA	7,744	7,813	70 bp	+	–
ATP8	Protein-coding gene	7,815	7,982	168 bp	+	42.3%
ATP6	Protein-coding gene	7,973	8,656	684 bp	+	47.7%
COX3	Protein-coding gene	8,656	9,439	784 bp	+	46.4%
tRNA-Gly	Transfer RNA	9,440	9,508	69 bp	+	–
ND3	Protein-coding gene	9,515	9,859	345 bp	+	45.5%
tRNA-Arg	Transfer RNA	9,864	9,932	69 bp	+	–
ND4L	Protein-coding gene	9,934	10,230	297 bp	+	46.5%
ND4	Protein-coding gene	10,224	11,601	1,378 bp	+	45.9%
tRNA-His	Transfer RNA	11,602	11,670	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,671	11,736	66 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,736	11,806	71 bp	+	–
ND5	Protein-coding gene	11,807	13,621	1,815 bp	+	44.6%
CYTB	Protein-coding gene	13,641	14,783	1,143 bp	+	45.8%
tRNA-Thr	Transfer RNA	14,788	14,857	70 bp	+	–
tRNA-Pro	Transfer RNA	14,865	14,934	70 bp	−	–
ND6	Protein-coding gene	14,943	15,464	522 bp	−	46.7%
tRNA-Glu	Transfer RNA	15,468	15,539	72 bp	−	–
D-loop	Control region	15,540	16,807	1,268 bp	–	40.5%