Cichla temensis
Speckled pavon
GC content
45.92%
Whole genome
Non-coding
952 bp
D-loop 517 bp
Where Speckled pavon sits among 2,335 species
Whole-genome GC content against maximum lifespan. Speckled pavon has the 1,912th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,530 bp
- GC skew (G − C) / (G + C)
- −0.358
- AT skew (A − T) / (A + T)
- +0.087
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,530 bp
Protein-coding11,415 bp
12S rRNA950 bp
16S rRNA1,662 bp
All tRNA1,552 bp
D-loop517 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.00% | −0.449 | +0.010 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 49.00% | −0.582 | +0.069 | |||||
| COX1Cytochrome c oxidase subunit I | 1,563 bp | 45.23% | −0.265 | −0.058 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.14% | −0.292 | +0.062 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.634 | +0.175 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.61% | −0.462 | +0.027 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.28% | −0.340 | +0.059 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.29% | −0.520 | −0.071 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.16% | −0.438 | −0.046 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 46.44% | −0.472 | +0.035 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.68% | −0.517 | +0.093 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.538 | +0.498 | |||||
| CYTBCytochrome b | 1,141 bp | 46.54% | −0.428 | −0.036 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 49.26% | −0.124 | +0.228 | |||||
| 16S rRNA16S ribosomal RNA | 1,662 bp | 44.71% | −0.147 | +0.249 | |||||
| D-loopControl region (D-loop) | 517 bp | 41.01% | −0.170 | −0.043 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU89
UUC150
Leu L17.5%
UUA70
UUG18
CUU110
CUC222
CUA222
CUG24
Ile I7.6%
AUU119
AUC170
Met M4.0%
AUA113
AUG39
Val V4.9%
GUU45
GUC53
GUA69
GUG19
Ser S6.6%
UCU27
UCC103
UCA63
UCG6
AGU10
AGC42
Pro P5.7%
CCU43
CCC109
CCA60
CCG7
Thr T8.6%
ACU49
ACC144
ACA132
ACG3
Ala A8.6%
GCU65
GCC154
GCA99
GCG10
Tyr Y2.9%
UAU36
UAC76
His H2.7%
CAU23
CAC81
Gln Q2.7%
CAA97
CAG5
Asn N3.1%
AAU32
AAC87
Lys K2.0%
AAA73
AAG5
Asp D1.9%
GAU23
GAC48
Glu E2.7%
GAA92
GAG10
Cys C0.7%
UGU8
UGC17
Trp W3.1%
UGA107
UGG12
Arg R1.9%
CGU5
CGC15
CGA48
CGG6
Gly G6.3%
GGU35
GGC91
GGA89
GGG24
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_084244.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,019 | 950 bp | + | 49.3% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,125 | 2,786 | 1,662 bp | + | 44.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,787 | 2,860 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,861 | 3,835 | 975 bp | + | 48.0% |
| tRNA-Ile | Transfer RNA | 3,838 | 3,907 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,907 | 3,977 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,977 | 4,045 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,046 | 5,090 | 1,045 bp | + | 49.0% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,162 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,164 | 5,232 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,236 | 5,308 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,404 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,405 | 5,474 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,476 | 7,038 | 1,563 bp | + | 45.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,051 | 7,121 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,125 | 7,197 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,203 | 7,893 | 691 bp | + | 44.1% |
| tRNA-Lys | Transfer RNA | 7,894 | 7,967 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,969 | 8,136 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 8,127 | 8,810 | 684 bp | + | 45.6% |
| COX3 | Protein-coding gene | 8,810 | 9,594 | 785 bp | + | 48.3% |
| tRNA-Gly | Transfer RNA | 9,594 | 9,665 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,666 | 10,014 | 349 bp | + | 51.3% |
| tRNA-Arg | Transfer RNA | 10,015 | 10,083 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,084 | 10,380 | 297 bp | + | 49.2% |
| ND4 | Protein-coding gene | 10,374 | 11,751 | 1,378 bp | + | 46.4% |
| tRNA-His | Transfer RNA | 11,752 | 11,820 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,821 | 11,887 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,892 | 11,964 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,965 | 13,803 | 1,839 bp | + | 45.7% |
| ND6 | Protein-coding gene | 13,800 | 14,321 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,322 | 14,390 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,395 | 15,535 | 1,141 bp | + | 46.5% |
| tRNA-Thr | Transfer RNA | 15,536 | 15,607 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,607 | 15,677 | 71 bp | − | – |
| D-loop | Control region | 15,952 | 16,468 | 517 bp | – | 41.0% |