Ciconia boyciana

Oriental white stork

Maximum lifespan

48.1 yr

AnAge record

mtDNA size

17,622 bp

RefSeq NC_002196.1

GC content

46.28%

Whole genome

Non-coding

2,129 bp

D-loop 2,053 bp

Where Oriental white stork sits among 2,335 species

Whole-genome GC content against maximum lifespan. Oriental white stork has the 162nd longest lifespan of them.

This species
Other birds
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,622 bp

GC skew (G − C) / (G + C): −0.383
AT skew (A − T) / (A + T): +0.149

Life history

Maximum lifespan: 48.1 years
Adult weight: 4.9 kg
Female sexual maturity: 3.5 years
Male sexual maturity: 4 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00571)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,622 bp

Protein-coding11,375 bp

12S rRNA968 bp

16S rRNA1,612 bp

All tRNA1,550 bp

D-loop2,053 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Ciconia boyciana genes

ND1NADH dehydrogenase subunit 1	978 bp	27.6%	26.1%	13.0%	33.3%	46.32%	−0.439	+0.029
ND2NADH dehydrogenase subunit 2	1,041 bp	31.8%	22.9%	9.6%	35.7%	45.34%	−0.576	+0.163
COX1Cytochrome c oxidase subunit I	1,551 bp	28.0%	24.3%	15.6%	32.1%	47.71%	−0.346	+0.070
COX2Cytochrome c oxidase subunit II	684 bp	30.3%	23.2%	15.1%	31.4%	46.49%	−0.352	+0.131
ATP8ATP synthase F0 subunit 8	168 bp	34.5%	23.8%	6.0%	35.7%	41.67%	−0.714	+0.184
ATP6ATP synthase F0 subunit 6	684 bp	30.4%	24.1%	10.2%	35.2%	45.47%	−0.550	+0.115
COX3Cytochrome c oxidase subunit III	784 bp	27.6%	24.1%	15.3%	33.0%	48.34%	−0.367	+0.067
ND3NADH dehydrogenase subunit 3	351 bp	28.5%	23.1%	11.1%	37.3%	48.43%	−0.541	+0.105
ND4LNADH dehydrogenase subunit 4L	297 bp	27.3%	23.9%	12.8%	36.0%	48.82%	−0.476	+0.066
ND4NADH dehydrogenase subunit 4	1,378 bp	30.5%	22.1%	10.0%	37.4%	47.39%	−0.577	+0.159
ND5NADH dehydrogenase subunit 5	1,812 bp	30.5%	21.0%	12.1%	36.4%	48.51%	−0.502	+0.183
ND6NADH dehydrogenase subunit 6	522 bp	36.0%	12.6%	13.4%	37.9%	51.34%	−0.478	+0.480
CYTBCytochrome b	1,143 bp	25.7%	23.1%	13.3%	37.9%	51.18%	−0.480	+0.054
12S rRNA12S ribosomal RNA	968 bp	32.0%	19.6%	19.8%	28.5%	48.35%	−0.179	+0.240
16S rRNA16S ribosomal RNA	1,612 bp	33.6%	20.0%	18.5%	27.9%	46.40%	−0.201	+0.255
D-loopControl region (D-loop)	2,053 bp	34.3%	26.2%	16.5%	22.9%	39.45%	−0.163	+0.134

Codon usage

Counts per codon, darker is more frequent

Gene

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.6%

UUU49

UUC162

Leu L17.8%

UUA38

UUG9

CUU71

CUC173

CUA350

CUG36

Ile I7.7%

AUU67

AUC224

Met M4.2%

AUA131

AUG29

Val V4.2%

GUU31

GUC51

GUA62

GUG16

Ser S7.1%

UCU28

UCC106

UCA81

UCG4

AGU6

AGC45

Pro P5.9%

CCU24

CCC89

CCA108

CCG4

Thr T9.7%

ACU44

ACC165

ACA148

ACG11

Ala A8.0%

GCU50

GCC157

GCA89

GCG9

Tyr Y2.9%

UAU25

UAC87

His H2.8%

CAU21

CAC86

Gln Q2.6%

CAA86

CAG14

Asn N3.3%

AAU19

AAC108

Lys K2.2%

AAA74

AAG9

Asp D1.7%

GAU16

GAC47

Glu E2.5%

GAA76

GAG19

Cys C0.8%

UGU2

UGC29

Trp W2.8%

UGA87

UGG19

Arg R1.9%

CGU4

CGC21

CGA43

CGG3

Gly G5.9%

GGU21

GGC87

GGA79

GGG37

Stop 0.3%

UAA7

UAG1

AGA0

AGG3

Genome map

38 annotated features in NC_002196.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (46.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Ciconia boyciana (NC_002196.1)
Feature	Type	Start	End	Length	Strand	GC
D-loop	Control region	1	2,053	2,053 bp	–	39.5%
tRNA-Phe	Transfer RNA	2,054	2,123	70 bp	+	–
12S rRNA	Ribosomal RNA	2,124	3,091	968 bp	+	48.4%
tRNA-Val	Transfer RNA	3,092	3,162	71 bp	+	–
16S rRNA	Ribosomal RNA	3,163	4,774	1,612 bp	+	46.4%
tRNA-Leu (UUR)	Transfer RNA	4,775	4,848	74 bp	+	–
ND1	Protein-coding gene	4,866	5,843	978 bp	+	46.3%
tRNA-Ile	Transfer RNA	5,842	5,913	72 bp	+	–
tRNA-Gln	Transfer RNA	5,922	5,992	71 bp	−	–
tRNA-Met	Transfer RNA	5,993	6,060	68 bp	+	–
ND2	Protein-coding gene	6,061	7,101	1,041 bp	+	45.3%
tRNA-Trp	Transfer RNA	7,101	7,176	76 bp	+	–
tRNA-Ala	Transfer RNA	7,178	7,246	69 bp	−	–
tRNA-Asn	Transfer RNA	7,249	7,321	73 bp	−	–
tRNA-Cys	Transfer RNA	7,324	7,390	67 bp	−	–
tRNA-Tyr	Transfer RNA	7,391	7,460	70 bp	−	–
COX1	Protein-coding gene	7,462	9,012	1,551 bp	+	47.7%
tRNA-Ser (UCN)	Transfer RNA	9,004	9,077	74 bp	−	–
tRNA-Asp	Transfer RNA	9,080	9,148	69 bp	+	–
COX2	Protein-coding gene	9,150	9,833	684 bp	+	46.5%
tRNA-Lys	Transfer RNA	9,835	9,906	72 bp	+	–
ATP8	Protein-coding gene	9,908	10,075	168 bp	+	41.7%
ATP6	Protein-coding gene	10,066	10,749	684 bp	+	45.5%
COX3	Protein-coding gene	10,749	11,532	784 bp	+	48.3%
tRNA-Gly	Transfer RNA	11,533	11,601	69 bp	+	–
ND3	Protein-coding gene	11,602	11,952	351 bp	+	48.4%
tRNA-Arg	Transfer RNA	11,957	12,025	69 bp	+	–
ND4L	Protein-coding gene	12,027	12,323	297 bp	+	48.8%
ND4	Protein-coding gene	12,317	13,694	1,378 bp	+	47.4%
tRNA-His	Transfer RNA	13,695	13,764	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	13,766	13,829	64 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	13,830	13,900	71 bp	+	–
ND5	Protein-coding gene	13,901	15,712	1,812 bp	+	48.5%
CYTB	Protein-coding gene	15,723	16,865	1,143 bp	+	51.2%
tRNA-Thr	Transfer RNA	16,867	16,934	68 bp	+	–
tRNA-Pro	Transfer RNA	16,946	17,015	70 bp	−	–
ND6	Protein-coding gene	17,026	17,547	522 bp	−	51.3%
tRNA-Glu	Transfer RNA	17,550	17,622	73 bp	−	–