Cirrhinus molitorella
Mud carp
GC content
42.68%
Whole genome
Non-coding
1,006 bp
D-loop 944 bp
Where Mud carp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Mud carp has the 597th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,602 bp
- GC skew (G − C) / (G + C)
- −0.285
- AT skew (A − T) / (A + T)
- +0.128
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,602 bp
Protein-coding11,391 bp
12S rRNA953 bp
16S rRNA1,693 bp
All tRNA1,559 bp
D-loop944 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.00% | −0.371 | +0.084 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 45.07% | −0.495 | +0.233 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.62% | −0.222 | +0.004 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.40% | −0.276 | +0.095 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 38.18% | −0.429 | +0.137 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 39.47% | −0.378 | +0.048 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.48% | −0.277 | +0.047 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 41.55% | −0.310 | −0.020 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.79% | −0.324 | −0.031 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 40.77% | −0.350 | +0.100 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 41.12% | −0.421 | +0.127 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.21% | −0.475 | +0.538 | |||||
| CYTBCytochrome b | 1,141 bp | 42.24% | −0.361 | +0.059 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 49.32% | −0.111 | +0.251 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 43.12% | −0.090 | +0.302 | |||||
| D-loopControl region (D-loop) | 944 bp | 34.00% | −0.221 | +0.043 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU86
UUC143
Leu L16.5%
UUA125
UUG22
CUU75
CUC94
CUA291
CUG20
Ile I7.9%
AUU193
AUC108
Met M4.5%
AUA138
AUG34
Val V5.6%
GUU46
GUC41
GUA109
GUG18
Ser S6.0%
UCU34
UCC51
UCA86
UCG6
AGU10
AGC41
Pro P5.6%
CCU21
CCC63
CCA125
CCG4
Thr T8.3%
ACU33
ACC119
ACA158
ACG5
Ala A8.7%
GCU42
GCC147
GCA137
GCG5
Tyr Y3.0%
UAU54
UAC61
His H2.8%
CAU22
CAC84
Gln Q2.6%
CAA92
CAG7
Asn N3.2%
AAU43
AAC78
Lys K2.0%
AAA74
AAG2
Asp D2.0%
GAU17
GAC60
Glu E2.7%
GAA87
GAG15
Cys C0.7%
UGU8
UGC17
Trp W3.2%
UGA110
UGG10
Arg R2.0%
CGU13
CGC9
CGA48
CGG6
Gly G6.5%
GGU26
GGC58
GGA136
GGG27
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_022182.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,022 | 953 bp | + | 49.3% |
| tRNA-Val | Transfer RNA | 1,023 | 1,094 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,787 | 1,693 bp | + | 43.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,788 | 2,863 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,865 | 3,839 | 975 bp | + | 44.0% |
| tRNA-Ile | Transfer RNA | 3,844 | 3,915 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,914 | 3,984 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,988 | 4,056 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,057 | 5,101 | 1,045 bp | + | 45.1% |
| tRNA-Trp | Transfer RNA | 5,102 | 5,172 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,174 | 5,242 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,244 | 5,316 | 73 bp | + | – |
| tRNA-Cys | Transfer RNA | 5,350 | 5,415 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,416 | 5,486 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,488 | 7,038 | 1,551 bp | + | 42.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,039 | 7,109 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,113 | 7,184 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,191 | 7,881 | 691 bp | + | 42.4% |
| tRNA-Lys | Transfer RNA | 7,882 | 7,957 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,959 | 8,123 | 165 bp | + | 38.2% |
| ATP6 | Protein-coding gene | 8,117 | 8,800 | 684 bp | + | 39.5% |
| COX3 | Protein-coding gene | 8,800 | 9,584 | 785 bp | + | 45.5% |
| tRNA-Gly | Transfer RNA | 9,585 | 9,656 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,657 | 10,005 | 349 bp | + | 41.6% |
| tRNA-Arg | Transfer RNA | 10,006 | 10,075 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,076 | 10,372 | 297 bp | + | 45.8% |
| ND4 | Protein-coding gene | 10,366 | 11,746 | 1,381 bp | + | 40.8% |
| tRNA-His | Transfer RNA | 11,747 | 11,815 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,816 | 11,884 | 69 bp | − | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,886 | 11,958 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,962 | 13,785 | 1,824 bp | + | 41.1% |
| ND6 | Protein-coding gene | 13,782 | 14,303 | 522 bp | − | 45.2% |
| tRNA-Glu | Transfer RNA | 14,305 | 14,373 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,379 | 15,519 | 1,141 bp | + | 42.2% |
| tRNA-Thr | Transfer RNA | 15,520 | 15,591 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,591 | 15,660 | 70 bp | − | – |
| D-loop | Control region | 15,659 | 16,602 | 944 bp | – | 34.0% |