Clinostomus elongatus
Redside dace
GC content
43.85%
Whole genome
Non-coding
1,038 bp
D-loop 976 bp
Where Redside dace sits among 2,335 species
Whole-genome GC content against maximum lifespan. Redside dace has the 2,109th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,650 bp
- GC skew (G − C) / (G + C)
- −0.204
- AT skew (A − T) / (A + T)
- +0.047
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,650 bp
Protein-coding11,403 bp
12S rRNA957 bp
16S rRNA1,690 bp
All tRNA1,562 bp
D-loop976 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.21% | −0.230 | −0.051 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 46.03% | −0.318 | +0.025 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.61% | −0.178 | −0.062 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.55% | −0.197 | +0.038 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 40.61% | −0.463 | +0.224 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 41.29% | −0.277 | −0.047 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.13% | −0.197 | −0.059 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.69% | −0.302 | −0.060 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.47% | −0.246 | −0.069 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.91% | −0.248 | −0.019 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 42.48% | −0.305 | +0.013 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.36% | −0.397 | +0.443 | |||||
| CYTBCytochrome b | 1,141 bp | 44.08% | −0.264 | −0.034 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 50.47% | −0.043 | +0.219 | |||||
| 16S rRNA16S ribosomal RNA | 1,690 bp | 44.44% | −0.047 | +0.267 | |||||
| D-loopControl region (D-loop) | 976 bp | 36.14% | −0.178 | +0.018 |
Codon usage
Counts per codon, darker is more frequent3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU120
UUC112
Leu L16.3%
UUA121
UUG38
CUU138
CUC96
CUA181
CUG44
Ile I7.0%
AUU180
AUC85
Met M4.9%
AUA134
AUG51
Val V6.5%
GUU64
GUC47
GUA102
GUG35
Ser S6.2%
UCU48
UCC58
UCA66
UCG12
AGU12
AGC40
Pro P5.7%
CCU37
CCC64
CCA93
CCG22
Thr T7.9%
ACU56
ACC90
ACA121
ACG32
Ala A9.0%
GCU58
GCC141
GCA125
GCG17
Tyr Y3.0%
UAU67
UAC46
His H2.7%
CAU33
CAC68
Gln Q2.6%
CAA84
CAG16
Asn N3.1%
AAU50
AAC67
Lys K2.1%
AAA63
AAG16
Asp D2.1%
GAU26
GAC52
Glu E2.6%
GAA65
GAG35
Cys C0.7%
UGU11
UGC15
Trp W3.2%
UGA100
UGG20
Arg R2.0%
CGU8
CGC11
CGA35
CGG22
Gly G6.5%
GGU38
GGC61
GGA108
GGG40
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_031572.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,026 | 957 bp | + | 50.5% |
| tRNA-Val | Transfer RNA | 1,027 | 1,098 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,788 | 1,690 bp | + | 44.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,789 | 2,864 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,866 | 3,840 | 975 bp | + | 44.2% |
| tRNA-Ile | Transfer RNA | 3,845 | 3,916 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,915 | 3,985 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,987 | 4,055 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,056 | 5,100 | 1,045 bp | + | 46.0% |
| tRNA-Trp | Transfer RNA | 5,101 | 5,172 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,174 | 5,242 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,244 | 5,316 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,348 | 5,415 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,417 | 5,487 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,489 | 7,039 | 1,551 bp | + | 43.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,040 | 7,110 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,114 | 7,187 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,200 | 7,890 | 691 bp | + | 42.6% |
| tRNA-Lys | Transfer RNA | 7,891 | 7,966 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,968 | 8,132 | 165 bp | + | 40.6% |
| ATP6 | Protein-coding gene | 8,126 | 8,808 | 683 bp | + | 41.3% |
| COX3 | Protein-coding gene | 8,809 | 9,592 | 784 bp | + | 44.1% |
| tRNA-Gly | Transfer RNA | 9,593 | 9,664 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,665 | 10,013 | 349 bp | + | 42.7% |
| tRNA-Arg | Transfer RNA | 10,014 | 10,082 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,083 | 10,379 | 297 bp | + | 46.5% |
| ND4 | Protein-coding gene | 10,373 | 11,754 | 1,382 bp | + | 42.9% |
| tRNA-His | Transfer RNA | 11,755 | 11,823 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,824 | 11,892 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,894 | 11,966 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,967 | 13,802 | 1,836 bp | + | 42.5% |
| ND6 | Protein-coding gene | 13,799 | 14,320 | 522 bp | − | 46.4% |
| tRNA-Glu | Transfer RNA | 14,321 | 14,388 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,393 | 15,533 | 1,141 bp | + | 44.1% |
| tRNA-Thr | Transfer RNA | 15,534 | 15,605 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,605 | 15,674 | 70 bp | − | – |
| D-loop | Control region | 15,675 | 16,650 | 976 bp | – | 36.1% |