Clupanodon thrissa
Chinese gizzard shad
GC content
48.13%
Whole genome
Non-coding
1,094 bp
D-loop 1,026 bp
Where Chinese gizzard shad sits among 2,335 species
Whole-genome GC content against maximum lifespan. Chinese gizzard shad has the 2,134th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,692 bp
- GC skew (G − C) / (G + C)
- −0.197
- AT skew (A − T) / (A + T)
- +0.026
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,692 bp
Protein-coding11,403 bp
12S rRNA954 bp
16S rRNA1,690 bp
All tRNA1,552 bp
D-loop1,026 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 52.00% | −0.211 | −0.120 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 49.28% | −0.320 | +0.019 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.20% | −0.161 | −0.060 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.45% | −0.227 | +0.032 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.325 | +0.091 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 48.02% | −0.335 | −0.037 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.17% | −0.249 | −0.083 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.86% | −0.310 | −0.131 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.84% | −0.298 | −0.110 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.73% | −0.236 | −0.028 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 46.79% | −0.269 | −0.019 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.51% | −0.226 | +0.321 | |||||
| CYTBCytochrome b | 1,141 bp | 48.99% | −0.231 | −0.089 | |||||
| 12S rRNA12S ribosomal RNA | 954 bp | 51.15% | −0.082 | +0.180 | |||||
| 16S rRNA16S ribosomal RNA | 1,690 bp | 48.52% | −0.063 | +0.241 | |||||
| D-loopControl region (D-loop) | 1,026 bp | 40.25% | −0.128 | +0.038 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU88
UUC144
Leu L16.4%
UUA57
UUG32
CUU130
CUC127
CUA179
CUG98
Ile I6.9%
AUU134
AUC129
Met M4.2%
AUA56
AUG105
Val V6.4%
GUU51
GUC61
GUA79
GUG53
Ser S6.1%
UCU41
UCC67
UCA52
UCG22
AGU8
AGC41
Pro P5.7%
CCU57
CCC75
CCA71
CCG15
Thr T8.1%
ACU58
ACC123
ACA100
ACG29
Ala A9.7%
GCU75
GCC156
GCA110
GCG28
Tyr Y3.0%
UAU34
UAC81
His H2.7%
CAU33
CAC71
Gln Q2.5%
CAA66
CAG28
Asn N2.9%
AAU36
AAC74
Lys K2.0%
AAA46
AAG31
Asp D2.0%
GAU31
GAC47
Glu E2.7%
GAA69
GAG32
Cys C0.7%
UGU5
UGC23
Trp W3.1%
UGA99
UGG19
Arg R2.0%
CGU6
CGC10
CGA47
CGG15
Gly G6.4%
GGU28
GGC59
GGA82
GGG76
Stop 0.2%
UAA6
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_018600.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,022 | 954 bp | + | 51.2% |
| tRNA-Val | Transfer RNA | 1,023 | 1,094 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,784 | 1,690 bp | + | 48.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,859 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,860 | 3,834 | 975 bp | + | 52.0% |
| tRNA-Ile | Transfer RNA | 3,842 | 3,913 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,913 | 3,983 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,983 | 4,051 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,052 | 5,096 | 1,045 bp | + | 49.3% |
| tRNA-Trp | Transfer RNA | 5,097 | 5,168 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,170 | 5,238 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,240 | 5,313 | 74 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,346 | 5,411 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,415 | 5,485 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,487 | 7,037 | 1,551 bp | + | 47.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,038 | 7,108 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,113 | 7,181 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,194 | 7,884 | 691 bp | + | 46.5% |
| tRNA-Lys | Transfer RNA | 7,885 | 7,958 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,960 | 8,127 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,118 | 8,800 | 683 bp | + | 48.0% |
| COX3 | Protein-coding gene | 8,801 | 9,585 | 785 bp | + | 49.2% |
| tRNA-Gly | Transfer RNA | 9,586 | 9,657 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,658 | 10,006 | 349 bp | + | 49.9% |
| tRNA-Arg | Transfer RNA | 10,007 | 10,076 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,077 | 10,373 | 297 bp | + | 50.8% |
| ND4 | Protein-coding gene | 10,367 | 11,747 | 1,381 bp | + | 48.7% |
| tRNA-His | Transfer RNA | 11,748 | 11,816 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,817 | 11,883 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,884 | 11,955 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,956 | 13,791 | 1,836 bp | + | 46.8% |
| ND6 | Protein-coding gene | 13,788 | 14,309 | 522 bp | − | 47.5% |
| tRNA-Glu | Transfer RNA | 14,310 | 14,378 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,385 | 15,525 | 1,141 bp | + | 49.0% |
| tRNA-Thr | Transfer RNA | 15,526 | 15,597 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,597 | 15,666 | 70 bp | − | – |
| D-loop | Control region | 15,667 | 16,692 | 1,026 bp | – | 40.3% |