Clupeonella cultriventris

Black sea sprat

Maximum lifespan

5 yr

AnAge record

mtDNA size

16,650 bp

RefSeq NC_015109.1

GC content

47.24%

Whole genome

Non-coding

1,066 bp

D-loop 1,004 bp

Where Black sea sprat sits among 2,335 species

Whole-genome GC content against maximum lifespan. Black sea sprat has the 1,982nd longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,650 bp

GC skew (G − C) / (G + C): −0.183
AT skew (A − T) / (A + T): −0.010

Life history

Maximum lifespan: 5 years
Female sexual maturity: 2.5 years
Male sexual maturity: 2.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03838)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,650 bp

Protein-coding11,403 bp

12S rRNA951 bp

16S rRNA1,680 bp

All tRNA1,550 bp

D-loop1,004 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Clupeonella cultriventris genes

ND1NADH dehydrogenase subunit 1	975 bp	20.5%	29.2%	20.1%	30.2%	50.26%	−0.200	−0.175
ND2NADH dehydrogenase subunit 2	1,045 bp	23.3%	26.3%	17.2%	33.1%	50.34%	−0.316	−0.060
COX1Cytochrome c oxidase subunit I	1,551 bp	24.4%	29.9%	19.3%	26.4%	45.71%	−0.154	−0.100
COX2Cytochrome c oxidase subunit II	691 bp	27.5%	28.7%	17.4%	26.5%	43.85%	−0.208	−0.021
ATP8ATP synthase F0 subunit 8	168 bp	29.2%	27.4%	14.3%	29.2%	43.45%	−0.342	+0.032
ATP6ATP synthase F0 subunit 6	684 bp	24.9%	29.7%	15.6%	29.8%	45.47%	−0.312	−0.088
COX3Cytochrome c oxidase subunit III	785 bp	22.7%	27.8%	19.0%	30.6%	49.55%	−0.234	−0.101
ND3NADH dehydrogenase subunit 3	349 bp	21.2%	30.9%	18.9%	28.9%	47.85%	−0.210	−0.187
ND4LNADH dehydrogenase subunit 4L	297 bp	22.6%	27.6%	18.5%	31.3%	49.83%	−0.257	−0.101
ND4NADH dehydrogenase subunit 4	1,381 bp	22.3%	29.2%	19.6%	29.0%	48.52%	−0.194	−0.134
ND5NADH dehydrogenase subunit 5	1,836 bp	26.1%	28.3%	16.6%	29.0%	45.59%	−0.271	−0.039
ND6NADH dehydrogenase subunit 6	522 bp	36.8%	16.1%	17.8%	29.3%	47.13%	−0.244	+0.391
CYTBCytochrome b	1,141 bp	22.2%	31.1%	17.8%	28.9%	46.71%	−0.238	−0.168
12S rRNA12S ribosomal RNA	951 bp	28.9%	20.4%	23.8%	26.9%	50.68%	−0.062	+0.173
16S rRNA16S ribosomal RNA	1,680 bp	32.0%	19.3%	22.9%	25.8%	48.69%	−0.059	+0.248
D-loopControl region (D-loop)	1,004 bp	30.9%	30.4%	17.5%	21.2%	38.75%	−0.095	+0.008

Codon usage

Counts per codon, darker is more frequent

Gene

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU101

UUC135

Leu L16.4%

UUA57

UUG28

CUU179

CUC128

CUA147

CUG86

Ile I6.9%

AUU174

AUC87

Met M4.1%

AUA45

AUG110

Val V6.5%

GUU84

GUC66

GUA79

GUG20

Ser S6.2%

UCU54

UCC64

UCA52

UCG14

AGU15

AGC37

Pro P5.6%

CCU59

CCC79

CCA58

CCG19

Thr T7.7%

ACU80

ACC102

ACA89

ACG22

Ala A9.8%

GCU78

GCC152

GCA114

GCG30

Tyr Y3.0%

UAU48

UAC65

His H2.8%

CAU30

CAC75

Gln Q2.5%

CAA67

CAG29

Asn N2.9%

AAU54

AAC58

Lys K2.0%

AAA46

AAG31

Asp D2.0%

GAU27

GAC50

Glu E2.6%

GAA62

GAG38

Cys C0.8%

UGU16

UGC13

Trp W3.2%

UGA84

UGG36

Arg R2.0%

CGU10

CGC8

CGA41

CGG17

Gly G6.6%

GGU32

GGC57

GGA92

GGG69

Stop 0.2%

UAA5

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_015109.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Clupeonella cultriventris (NC_015109.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,019	951 bp	+	50.7%
tRNA-Val	Transfer RNA	1,020	1,091	72 bp	+	–
16S rRNA	Ribosomal RNA	1,092	2,771	1,680 bp	+	48.7%
tRNA-Leu (UUR)	Transfer RNA	2,772	2,846	75 bp	+	–
ND1	Protein-coding gene	2,847	3,821	975 bp	+	50.3%
tRNA-Ile	Transfer RNA	3,827	3,898	72 bp	+	–
tRNA-Gln	Transfer RNA	3,898	3,968	71 bp	−	–
tRNA-Met	Transfer RNA	3,968	4,036	69 bp	+	–
ND2	Protein-coding gene	4,037	5,081	1,045 bp	+	50.3%
tRNA-Trp	Transfer RNA	5,082	5,153	72 bp	+	–
tRNA-Ala	Transfer RNA	5,155	5,223	69 bp	−	–
tRNA-Asn	Transfer RNA	5,225	5,297	73 bp	−	–
tRNA-Cys	Transfer RNA	5,329	5,394	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,397	5,467	71 bp	−	–
COX1	Protein-coding gene	5,469	7,019	1,551 bp	+	45.7%
tRNA-Ser (UCN)	Transfer RNA	7,020	7,090	71 bp	−	–
tRNA-Asp	Transfer RNA	7,095	7,164	70 bp	+	–
COX2	Protein-coding gene	7,177	7,867	691 bp	+	43.9%
tRNA-Lys	Transfer RNA	7,868	7,941	74 bp	+	–
ATP8	Protein-coding gene	7,943	8,110	168 bp	+	43.5%
ATP6	Protein-coding gene	8,101	8,784	684 bp	+	45.5%
COX3	Protein-coding gene	8,784	9,568	785 bp	+	49.6%
tRNA-Gly	Transfer RNA	9,569	9,640	72 bp	+	–
ND3	Protein-coding gene	9,641	9,989	349 bp	+	47.9%
tRNA-Arg	Transfer RNA	9,990	10,058	69 bp	+	–
ND4L	Protein-coding gene	10,059	10,355	297 bp	+	49.8%
ND4	Protein-coding gene	10,349	11,729	1,381 bp	+	48.5%
tRNA-His	Transfer RNA	11,730	11,798	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,799	11,866	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,866	11,937	72 bp	+	–
ND5	Protein-coding gene	11,938	13,773	1,836 bp	+	45.6%
ND6	Protein-coding gene	13,770	14,291	522 bp	−	47.1%
tRNA-Glu	Transfer RNA	14,292	14,360	69 bp	−	–
CYTB	Protein-coding gene	14,365	15,505	1,141 bp	+	46.7%
tRNA-Thr	Transfer RNA	15,506	15,577	72 bp	+	–
tRNA-Pro	Transfer RNA	15,577	15,646	70 bp	−	–
D-loop	Control region	15,647	16,650	1,004 bp	–	38.7%