Cobitis elongatoides
GC content
42.11%
Whole genome
Non-coding
976 bp
Including the D-loop
Where Cobitis elongatoides sits among 2,335 species
Whole-genome GC content against maximum lifespan. Cobitis elongatoides has the 2,018th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,541 bp
- GC skew (G − C) / (G + C)
- −0.204
- AT skew (A − T) / (A + T)
- +0.014
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,541 bp
Protein-coding11,402 bp
12S rRNA951 bp
16S rRNA1,655 bp
All tRNA1,559 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.59% | −0.280 | −0.036 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 40.57% | −0.335 | +0.005 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.07% | −0.147 | −0.112 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.11% | −0.189 | −0.080 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 33.93% | −0.439 | +0.063 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.21% | −0.287 | −0.071 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.13% | −0.225 | −0.082 | |||||
| ND3NADH dehydrogenase subunit 3 | 350 bp | 42.29% | −0.216 | −0.149 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.13% | −0.285 | −0.050 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 43.05% | −0.284 | −0.057 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,848 bp | 39.61% | −0.322 | −0.004 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 41.76% | −0.367 | +0.336 | |||||
| CYTBCytochrome b | 1,141 bp | 40.67% | −0.233 | −0.090 | |||||
| 12S rRNA12S ribosomal RNA | 951 bp | 47.32% | −0.062 | +0.190 | |||||
| 16S rRNA16S ribosomal RNA | 1,655 bp | 43.08% | −0.027 | +0.227 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU139
UUC89
Leu L16.3%
UUA148
UUG26
CUU140
CUC82
CUA179
CUG47
Ile I7.7%
AUU223
AUC70
Met M4.6%
AUA130
AUG47
Val V5.9%
GUU83
GUC32
GUA88
GUG22
Ser S6.5%
UCU53
UCC50
UCA84
UCG11
AGU11
AGC37
Pro P5.9%
CCU60
CCC69
CCA80
CCG17
Thr T7.3%
ACU73
ACC72
ACA127
ACG5
Ala A9.1%
GCU60
GCC148
GCA118
GCG19
Tyr Y3.0%
UAU74
UAC40
His H2.7%
CAU50
CAC54
Gln Q2.7%
CAA82
CAG20
Asn N3.4%
AAU70
AAC58
Lys K2.0%
AAA63
AAG13
Asp D2.0%
GAU34
GAC41
Glu E2.6%
GAA67
GAG32
Cys C0.8%
UGU13
UGC19
Trp W2.9%
UGA92
UGG20
Arg R2.0%
CGU12
CGC14
CGA46
CGG6
Gly G6.4%
GGU47
GGC61
GGA84
GGG52
Stop 0.2%
UAA6
UAG0
AGA1
AGG0
Genome map
37 annotated features in NC_023947.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,020 | 951 bp | + | 47.3% |
| tRNA-Val | Transfer RNA | 1,021 | 1,092 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,746 | 1,655 bp | + | 43.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,748 | 2,822 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,824 | 3,798 | 975 bp | + | 43.6% |
| tRNA-Ile | Transfer RNA | 3,802 | 3,873 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,872 | 3,942 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,944 | 4,012 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,013 | 5,057 | 1,045 bp | + | 40.6% |
| tRNA-Trp | Transfer RNA | 5,058 | 5,127 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,129 | 5,197 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,199 | 5,271 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,302 | 5,370 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,371 | 5,439 | 69 bp | − | – |
| COX1 | Protein-coding gene | 5,441 | 6,991 | 1,551 bp | + | 43.1% |
| tRNA-Ser (UCN) | Transfer RNA | 6,993 | 7,063 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,066 | 7,137 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,151 | 7,841 | 691 bp | + | 42.1% |
| tRNA-Lys | Transfer RNA | 7,841 | 7,918 | 78 bp | + | – |
| ATP8 | Protein-coding gene | 7,919 | 8,086 | 168 bp | + | 33.9% |
| ATP6 | Protein-coding gene | 8,077 | 8,760 | 684 bp | + | 40.2% |
| COX3 | Protein-coding gene | 8,760 | 9,543 | 784 bp | + | 44.1% |
| tRNA-Gly | Transfer RNA | 9,544 | 9,616 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,617 | 9,966 | 350 bp | + | 42.3% |
| tRNA-Arg | Transfer RNA | 9,967 | 10,036 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,037 | 10,333 | 297 bp | + | 46.1% |
| ND4 | Protein-coding gene | 10,327 | 11,708 | 1,382 bp | + | 43.1% |
| tRNA-His | Transfer RNA | 11,709 | 11,777 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,778 | 11,845 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,847 | 11,918 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,919 | 13,766 | 1,848 bp | + | 39.6% |
| ND6 | Protein-coding gene | 13,749 | 14,270 | 522 bp | − | 41.8% |
| tRNA-Glu | Transfer RNA | 14,271 | 14,339 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,346 | 15,486 | 1,141 bp | + | 40.7% |
| tRNA-Thr | Transfer RNA | 15,487 | 15,558 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,559 | 15,627 | 69 bp | − | – |