Coilia nasus
Japanese grenadier anchovy
GC content
42.52%
Whole genome
Non-coding
1,312 bp
D-loop 1,252 bp
Where Japanese grenadier anchovy sits among 2,335 species
Whole-genome GC content against maximum lifespan. Japanese grenadier anchovy has the 2,045th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,897 bp
- GC skew (G − C) / (G + C)
- −0.268
- AT skew (A − T) / (A + T)
- +0.084
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,897 bp
Protein-coding11,399 bp
12S rRNA953 bp
16S rRNA1,688 bp
All tRNA1,546 bp
D-loop1,252 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.69% | −0.357 | +0.020 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 43.98% | −0.478 | +0.102 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 42.85% | −0.172 | −0.022 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.11% | −0.251 | +0.050 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.69% | −0.385 | +0.029 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 39.82% | −0.404 | −0.027 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.10% | −0.249 | −0.030 | |||||
| ND3NADH dehydrogenase subunit 3 | 350 bp | 40.29% | −0.291 | −0.014 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.13% | −0.299 | +0.013 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.43% | −0.382 | +0.082 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 40.69% | −0.398 | +0.100 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 42.72% | −0.489 | +0.485 | |||||
| CYTBCytochrome b | 1,141 bp | 41.54% | −0.304 | −0.049 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 48.79% | −0.118 | +0.234 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 44.37% | −0.100 | +0.269 | |||||
| D-loopControl region (D-loop) | 1,252 bp | 33.15% | −0.157 | +0.004 |
Codon usage
Counts per codon, darker is more frequent3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU120
UUC112
Leu L15.9%
UUA138
UUG23
CUU122
CUC102
CUA195
CUG26
Ile I7.6%
AUU173
AUC116
Met M4.4%
AUA139
AUG29
Val V6.0%
GUU57
GUC50
GUA105
GUG15
Ser S6.1%
UCU34
UCC52
UCA84
UCG4
AGU15
AGC43
Pro P5.7%
CCU62
CCC64
CCA77
CCG12
Thr T8.5%
ACU62
ACC117
ACA139
ACG7
Ala A9.0%
GCU65
GCC123
GCA140
GCG14
Tyr Y3.0%
UAU47
UAC67
His H2.7%
CAU27
CAC75
Gln Q2.6%
CAA90
CAG8
Asn N3.3%
AAU48
AAC79
Lys K2.1%
AAA76
AAG3
Asp D1.9%
GAU13
GAC60
Glu E2.7%
GAA90
GAG13
Cys C0.8%
UGU13
UGC18
Trp W3.2%
UGA113
UGG7
Arg R1.9%
CGU5
CGC12
CGA51
CGG5
Gly G6.3%
GGU38
GGC50
GGA119
GGG34
Stop 0.2%
UAA6
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_009579.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,022 | 953 bp | + | 48.8% |
| tRNA-Val | Transfer RNA | 1,023 | 1,094 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,782 | 1,688 bp | + | 44.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,783 | 2,857 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,858 | 3,832 | 975 bp | + | 43.7% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,906 | 73 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,906 | 3,977 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,977 | 4,045 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,046 | 5,091 | 1,046 bp | + | 44.0% |
| tRNA-Trp | Transfer RNA | 5,092 | 5,161 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,164 | 5,232 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,234 | 5,306 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,338 | 5,403 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,404 | 5,474 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,476 | 7,020 | 1,545 bp | + | 42.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,021 | 7,091 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,097 | 7,164 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,176 | 7,866 | 691 bp | + | 42.1% |
| tRNA-Lys | Transfer RNA | 7,867 | 7,939 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,941 | 8,108 | 168 bp | + | 38.7% |
| ATP6 | Protein-coding gene | 8,099 | 8,781 | 683 bp | + | 39.8% |
| COX3 | Protein-coding gene | 8,782 | 9,566 | 785 bp | + | 45.1% |
| tRNA-Gly | Transfer RNA | 9,567 | 9,637 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,638 | 9,987 | 350 bp | + | 40.3% |
| tRNA-Arg | Transfer RNA | 9,987 | 10,055 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,056 | 10,352 | 297 bp | + | 46.1% |
| ND4 | Protein-coding gene | 10,346 | 11,726 | 1,381 bp | + | 42.4% |
| tRNA-His | Transfer RNA | 11,727 | 11,796 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,798 | 11,864 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,865 | 11,936 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,937 | 13,772 | 1,836 bp | + | 40.7% |
| ND6 | Protein-coding gene | 13,769 | 14,290 | 522 bp | − | 42.7% |
| tRNA-Glu | Transfer RNA | 14,292 | 14,360 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,366 | 15,506 | 1,141 bp | + | 41.5% |
| tRNA-Thr | Transfer RNA | 15,507 | 15,576 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,576 | 15,645 | 70 bp | − | – |
| D-loop | Control region | 15,646 | 16,897 | 1,252 bp | – | 33.2% |