Corbicula japonica
Japanese Corbicula
GC content
29.66%
Whole genome
Non-coding
2,026 bp
Including the D-loop
Where Japanese Corbicula sits among 2,335 species
Whole-genome GC content against maximum lifespan. Japanese Corbicula has the 1,591st longest lifespan of them.
- This species
- All other species
Base composition
Whole genome17,432 bp
- GC skew (G − C) / (G + C)
- +0.401
- AT skew (A − T) / (A + T)
- −0.231
About this record
- Lifespan source
- SeaLifeBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,432 bp
Protein-coding11,949 bp
12S rRNA868 bp
16S rRNA1,236 bp
All tRNA1,407 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 912 bp | 33.11% | +0.470 | −0.377 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,023 bp | 30.69% | +0.580 | −0.425 | |||||
| COX1Cytochrome c oxidase subunit I | 1,614 bp | 33.71% | +0.279 | −0.273 | |||||
| COX2Cytochrome c oxidase subunit II | 1,320 bp | 31.14% | +0.533 | −0.135 | |||||
| ATP8ATP synthase F0 subunit 8 | 114 bp | 26.32% | +0.267 | −0.286 | |||||
| ATP6ATP synthase F0 subunit 6 | 741 bp | 27.67% | +0.434 | −0.336 | |||||
| COX3Cytochrome c oxidase subunit III | 855 bp | 33.22% | +0.338 | −0.356 | |||||
| ND3NADH dehydrogenase subunit 3 | 402 bp | 29.60% | +0.513 | −0.371 | |||||
| ND4LNADH dehydrogenase subunit 4L | 285 bp | 25.97% | +0.486 | −0.488 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,341 bp | 32.14% | +0.471 | −0.374 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,707 bp | 27.89% | +0.395 | −0.316 | |||||
| ND6NADH dehydrogenase subunit 6 | 471 bp | 32.06% | +0.563 | −0.369 | |||||
| CYTBCytochrome b | 1,164 bp | 30.67% | +0.249 | −0.316 | |||||
| 12S rRNA12S ribosomal RNA | 868 bp | 33.53% | +0.299 | +0.040 | |||||
| 16S rRNA16S ribosomal RNA | 1,236 bp | 26.54% | +0.287 | −0.018 |
Codon usage
Counts per codon, darker is more frequent3,983 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F10.7%
UUU411
UUC16
Leu L13.9%
UUA294
UUG173
CUU70
CUC2
CUA12
CUG4
Ile I6.2%
AUU241
AUC5
Met M5.4%
AUA106
AUG108
Val V11.0%
GUU257
GUC3
GUA128
GUG51
Ser S10.7%
UCU161
UCC3
UCA26
UCG5
AGU67
AGC7
AGA99
AGG58
Pro P2.9%
CCU84
CCC2
CCA26
CCG4
Thr T3.2%
ACU103
ACC0
ACA22
ACG4
Ala A4.2%
GCU135
GCC4
GCA21
GCG8
Tyr Y3.5%
UAU132
UAC7
His H1.8%
CAU64
CAC8
Gln Q1.2%
CAA25
CAG21
Asn N2.7%
AAU100
AAC8
Lys K2.8%
AAA63
AAG48
Asp D2.2%
GAU82
GAC4
Glu E3.1%
GAA56
GAG69
Cys C1.7%
UGU66
UGC1
Trp W2.9%
UGA66
UGG51
Arg R1.7%
CGU30
CGC1
CGA20
CGG15
Gly G7.9%
GGU148
GGC7
GGA84
GGG74
Stop 0.3%
UAA7
UAG6
Genome map
37 annotated features in NC_060659.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (29.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| COX1 | Protein-coding gene | 1 | 1,614 | 1,614 bp | + | 33.7% |
| COX2 | Protein-coding gene | 1,673 | 2,992 | 1,320 bp | + | 31.1% |
| tRNA-Gly | Transfer RNA | 2,997 | 3,059 | 63 bp | + | – |
| tRNA-Arg | Transfer RNA | 3,070 | 3,131 | 62 bp | + | – |
| CYTB | Protein-coding gene | 3,132 | 4,295 | 1,164 bp | + | 30.7% |
| 16S rRNA | Ribosomal RNA | 4,281 | 5,516 | 1,236 bp | + | 26.5% |
| ATP8 | Protein-coding gene | 5,490 | 5,603 | 114 bp | + | 26.3% |
| ND4 | Protein-coding gene | 5,628 | 6,968 | 1,341 bp | + | 32.1% |
| tRNA-His | Transfer RNA | 6,968 | 7,029 | 62 bp | + | – |
| tRNA-Glu | Transfer RNA | 7,032 | 7,095 | 64 bp | + | – |
| tRNA-Ser | Transfer RNA | 7,092 | 7,154 | 63 bp | + | – |
| ATP6 | Protein-coding gene | 7,155 | 7,895 | 741 bp | + | 27.7% |
| ND3 | Protein-coding gene | 7,938 | 8,339 | 402 bp | + | 29.6% |
| tRNA-Ala | Transfer RNA | 8,339 | 8,402 | 64 bp | + | – |
| tRNA-Ile | Transfer RNA | 8,406 | 8,469 | 64 bp | + | – |
| tRNA-Lys | Transfer RNA | 8,475 | 8,538 | 64 bp | + | – |
| tRNA-Leu | Transfer RNA | 8,540 | 8,603 | 64 bp | + | – |
| ND1 | Protein-coding gene | 8,604 | 9,515 | 912 bp | + | 33.1% |
| tRNA-Leu | Transfer RNA | 9,515 | 9,578 | 64 bp | + | – |
| tRNA-Val | Transfer RNA | 9,580 | 9,643 | 64 bp | + | – |
| tRNA-Asn | Transfer RNA | 9,644 | 9,706 | 63 bp | + | – |
| ND5 | Protein-coding gene | 9,707 | 11,413 | 1,707 bp | + | 27.9% |
| ND6 | Protein-coding gene | 11,418 | 11,888 | 471 bp | + | 32.1% |
| ND4L | Protein-coding gene | 11,894 | 12,178 | 285 bp | + | 26.0% |
| tRNA-Gln | Transfer RNA | 12,181 | 12,247 | 67 bp | + | – |
| ND2 | Protein-coding gene | 12,248 | 13,270 | 1,023 bp | + | 30.7% |
| tRNA-Asp | Transfer RNA | 13,270 | 13,332 | 63 bp | + | – |
| tRNA-Thr | Transfer RNA | 13,333 | 13,398 | 66 bp | + | – |
| 12S rRNA | Ribosomal RNA | 13,398 | 14,265 | 868 bp | + | 33.5% |
| tRNA-Met | Transfer RNA | 14,259 | 14,326 | 68 bp | + | – |
| tRNA-Cys | Transfer RNA | 14,331 | 14,394 | 64 bp | + | – |
| tRNA-Tyr | Transfer RNA | 14,396 | 14,461 | 66 bp | + | – |
| tRNA-Ser | Transfer RNA | 14,462 | 14,528 | 67 bp | + | – |
| COX3 | Protein-coding gene | 14,550 | 15,404 | 855 bp | + | 33.2% |
| tRNA-Trp | Transfer RNA | 15,421 | 15,482 | 62 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,485 | 15,548 | 64 bp | + | – |
| tRNA-Phe | Transfer RNA | 17,318 | 17,380 | 63 bp | + | – |