Coregonus artedi

Cisco

Maximum lifespan

11 yr

AnAge record

mtDNA size

16,820 bp

RefSeq NC_036393.1

GC content

47.02%

Whole genome

Non-coding

1,228 bp

D-loop 1,160 bp

Where Cisco sits among 2,335 species

Whole-genome GC content against maximum lifespan. Cisco has the 1,503rd longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,820 bp

GC skew (G − C) / (G + C): −0.231
AT skew (A − T) / (A + T): +0.014

Life history

Maximum lifespan: 11 years
Adult weight: 1.8 kg

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 04447)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,820 bp

Protein-coding11,411 bp

12S rRNA947 bp

16S rRNA1,679 bp

All tRNA1,555 bp

D-loop1,160 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Coregonus artedi genes

ND1NADH dehydrogenase subunit 1	975 bp	22.4%	28.6%	18.4%	30.7%	49.03%	−0.251	−0.123
ND2NADH dehydrogenase subunit 2	1,050 bp	26.1%	26.2%	15.6%	32.1%	47.71%	−0.345	−0.002
COX1Cytochrome c oxidase subunit I	1,551 bp	23.1%	30.6%	19.1%	27.1%	46.23%	−0.172	−0.139
COX2Cytochrome c oxidase subunit II	691 bp	26.9%	27.4%	16.6%	29.1%	45.73%	−0.272	−0.008
ATP8ATP synthase F0 subunit 8	168 bp	28.0%	23.8%	13.7%	34.5%	48.21%	−0.432	+0.080
ATP6ATP synthase F0 subunit 6	684 bp	25.6%	27.6%	14.2%	32.6%	46.78%	−0.394	−0.038
COX3Cytochrome c oxidase subunit III	785 bp	23.8%	28.4%	17.8%	29.9%	47.77%	−0.253	−0.088
ND3NADH dehydrogenase subunit 3	349 bp	22.6%	28.7%	17.2%	31.5%	48.71%	−0.294	−0.117
ND4LNADH dehydrogenase subunit 4L	297 bp	21.5%	24.9%	19.5%	34.0%	53.54%	−0.270	−0.072
ND4NADH dehydrogenase subunit 4	1,381 bp	26.0%	27.2%	16.2%	30.6%	46.85%	−0.308	−0.022
ND5NADH dehydrogenase subunit 5	1,839 bp	26.4%	27.0%	15.6%	31.0%	46.60%	−0.330	−0.010
ND6NADH dehydrogenase subunit 6	522 bp	35.4%	13.0%	16.1%	35.4%	51.53%	−0.375	+0.462
CYTBCytochrome b	1,141 bp	24.1%	29.4%	17.2%	29.3%	46.45%	−0.260	−0.100
12S rRNA12S ribosomal RNA	947 bp	29.3%	20.4%	23.1%	27.2%	50.37%	−0.082	+0.179
16S rRNA16S ribosomal RNA	1,679 bp	31.8%	19.5%	23.4%	25.3%	48.72%	−0.039	+0.240
D-loopControl region (D-loop)	1,160 bp	31.3%	30.5%	14.2%	24.0%	38.19%	−0.255	+0.013

Codon usage

Counts per codon, darker is more frequent

Gene

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU111

UUC115

Leu L17.0%

UUA75

UUG28

CUU180

CUC122

CUA166

CUG77

Ile I6.7%

AUU129

AUC125

Met M4.2%

AUA103

AUG56

Val V6.5%

GUU69

GUC72

GUA66

GUG40

Ser S6.3%

UCU48

UCC64

UCA64

UCG9

AGU9

AGC46

Pro P5.6%

CCU37

CCC106

CCA52

CCG18

Thr T8.1%

ACU54

ACC129

ACA102

ACG22

Ala A9.1%

GCU62

GCC171

GCA98

GCG16

Tyr Y2.9%

UAU44

UAC66

His H2.8%

CAU25

CAC80

Gln Q2.6%

CAA72

CAG27

Asn N3.0%

AAU45

AAC68

Lys K2.0%

AAA51

AAG24

Asp D2.1%

GAU36

GAC44

Glu E2.7%

GAA61

GAG41

Cys C0.7%

UGU12

UGC15

Trp W3.2%

UGA92

UGG31

Arg R2.0%

CGU8

CGC9

CGA42

CGG18

Gly G6.5%

GGU46

GGC72

GGA71

GGG60

Stop 0.2%

UAA6

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_036393.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Coregonus artedi (NC_036393.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,015	947 bp	+	50.4%
tRNA-Val	Transfer RNA	1,016	1,087	72 bp	+	–
16S rRNA	Ribosomal RNA	1,088	2,766	1,679 bp	+	48.7%
tRNA-Leu (UUR)	Transfer RNA	2,767	2,841	75 bp	+	–
ND1	Protein-coding gene	2,842	3,816	975 bp	+	49.0%
tRNA-Ile	Transfer RNA	3,824	3,895	72 bp	+	–
tRNA-Gln	Transfer RNA	3,893	3,963	71 bp	−	–
tRNA-Met	Transfer RNA	3,963	4,031	69 bp	+	–
ND2	Protein-coding gene	4,032	5,081	1,050 bp	+	47.7%
tRNA-Trp	Transfer RNA	5,083	5,154	72 bp	+	–
tRNA-Ala	Transfer RNA	5,156	5,224	69 bp	−	–
tRNA-Asn	Transfer RNA	5,226	5,298	73 bp	−	–
tRNA-Cys	Transfer RNA	5,333	5,400	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,401	5,470	70 bp	−	–
COX1	Protein-coding gene	5,472	7,022	1,551 bp	+	46.2%
tRNA-Ser (UCN)	Transfer RNA	7,023	7,093	71 bp	−	–
tRNA-Asp	Transfer RNA	7,098	7,171	74 bp	+	–
COX2	Protein-coding gene	7,186	7,876	691 bp	+	45.7%
tRNA-Lys	Transfer RNA	7,877	7,950	74 bp	+	–
ATP8	Protein-coding gene	7,952	8,119	168 bp	+	48.2%
ATP6	Protein-coding gene	8,110	8,793	684 bp	+	46.8%
COX3	Protein-coding gene	8,793	9,577	785 bp	+	47.8%
tRNA-Gly	Transfer RNA	9,578	9,647	70 bp	+	–
ND3	Protein-coding gene	9,648	9,996	349 bp	+	48.7%
tRNA-Arg	Transfer RNA	9,997	10,066	70 bp	+	–
ND4L	Protein-coding gene	10,067	10,363	297 bp	+	53.5%
ND4	Protein-coding gene	10,357	11,737	1,381 bp	+	46.9%
tRNA-His	Transfer RNA	11,738	11,806	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,807	11,875	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,877	11,949	73 bp	+	–
ND5	Protein-coding gene	11,950	13,788	1,839 bp	+	46.6%
ND6	Protein-coding gene	13,785	14,306	522 bp	−	51.5%
tRNA-Glu	Transfer RNA	14,307	14,375	69 bp	−	–
CYTB	Protein-coding gene	14,379	15,519	1,141 bp	+	46.5%
tRNA-Thr	Transfer RNA	15,520	15,591	72 bp	+	–
tRNA-Pro	Transfer RNA	15,591	15,660	70 bp	−	–
D-loop	Control region	15,661	16,820	1,160 bp	–	38.2%