Coregonus autumnalis
Arctic cisco
GC content
47.58%
Whole genome
Non-coding
1,144 bp
D-loop 1,075 bp
Where Arctic cisco sits among 2,335 species
Whole-genome GC content against maximum lifespan. Arctic cisco has the 922nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,736 bp
- GC skew (G − C) / (G + C)
- −0.237
- AT skew (A − T) / (A + T)
- +0.020
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,736 bp
Protein-coding11,411 bp
12S rRNA947 bp
16S rRNA1,679 bp
All tRNA1,555 bp
D-loop1,075 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.44% | −0.257 | −0.116 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,050 bp | 48.19% | −0.383 | +0.026 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.91% | −0.171 | −0.136 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.15% | −0.244 | −0.029 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.450 | +0.091 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.81% | −0.401 | −0.042 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.54% | −0.270 | −0.084 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.14% | −0.321 | −0.116 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.18% | −0.289 | −0.062 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.36% | −0.321 | −0.015 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.15% | −0.324 | −0.010 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 51.34% | −0.388 | +0.480 | |||||
| CYTBCytochrome b | 1,141 bp | 47.77% | −0.295 | −0.077 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 50.26% | −0.080 | +0.176 | |||||
| 16S rRNA16S ribosomal RNA | 1,679 bp | 48.90% | −0.045 | +0.242 | |||||
| D-loopControl region (D-loop) | 1,075 bp | 39.44% | −0.241 | +0.011 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU109
UUC116
Leu L17.1%
UUA66
UUG36
CUU172
CUC130
CUA173
CUG74
Ile I6.7%
AUU122
AUC134
Met M4.1%
AUA93
AUG64
Val V6.4%
GUU66
GUC76
GUA59
GUG43
Ser S6.3%
UCU49
UCC65
UCA61
UCG9
AGU9
AGC46
Pro P5.6%
CCU34
CCC112
CCA51
CCG16
Thr T8.0%
ACU49
ACC130
ACA104
ACG20
Ala A9.3%
GCU60
GCC181
GCA98
GCG15
Tyr Y2.9%
UAU41
UAC69
His H2.8%
CAU24
CAC81
Gln Q2.6%
CAA73
CAG26
Asn N2.9%
AAU39
AAC73
Lys K2.0%
AAA46
AAG29
Asp D2.1%
GAU34
GAC45
Glu E2.7%
GAA72
GAG31
Cys C0.7%
UGU13
UGC14
Trp W3.2%
UGA97
UGG26
Arg R2.0%
CGU8
CGC10
CGA43
CGG16
Gly G6.5%
GGU40
GGC82
GGA69
GGG58
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_027277.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 50.3% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,766 | 1,679 bp | + | 48.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,767 | 2,841 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,842 | 3,816 | 975 bp | + | 49.4% |
| tRNA-Ile | Transfer RNA | 3,824 | 3,895 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,893 | 3,963 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,963 | 4,031 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,032 | 5,081 | 1,050 bp | + | 48.2% |
| tRNA-Trp | Transfer RNA | 5,083 | 5,154 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,156 | 5,224 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,226 | 5,298 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,333 | 5,400 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,401 | 5,470 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,472 | 7,022 | 1,551 bp | + | 47.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,023 | 7,093 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,171 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 45.2% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 47.8% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 48.5% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,647 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,648 | 9,996 | 349 bp | + | 48.1% |
| tRNA-Arg | Transfer RNA | 9,997 | 10,067 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 51.2% |
| ND4 | Protein-coding gene | 10,358 | 11,738 | 1,381 bp | + | 47.4% |
| tRNA-His | Transfer RNA | 11,739 | 11,807 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,876 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,878 | 11,950 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,951 | 13,789 | 1,839 bp | + | 47.2% |
| ND6 | Protein-coding gene | 13,786 | 14,307 | 522 bp | − | 51.3% |
| tRNA-Glu | Transfer RNA | 14,308 | 14,375 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,380 | 15,520 | 1,141 bp | + | 47.8% |
| tRNA-Thr | Transfer RNA | 15,521 | 15,592 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,592 | 15,661 | 70 bp | − | – |
| D-loop | Control region | 15,662 | 16,736 | 1,075 bp | – | 39.4% |